BAC Information

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BAC

Clone NameMSMg01-327C14
Chromosome8 (Build37)
Map Location 74,673,795 - 74,674,165
singlet/doubletsinglet
Overlap geneTpm4
Upstream geneLOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374
Downstream geneRab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327C14.T7 (MSMg01no327_c14.b1)MSMg01-327C14.TJ (MSMg01no327_c14.g1)
ACCAG444591AG444592
length742741
length of high quality
(start - end)
372 (40 - 411)344 (69 - 412)
definitionCHROMAT_FILE: MSMg01no327_c14.b1 PHD_FILE: MSMg01no327_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:00 2005CHROMAT_FILE: MSMg01no327_c14.g1 PHD_FILE: MSMg01no327_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGGACTCCGCGGAATTCAGA
TGATGTTACATAAAAGACTTTGCTACTAGATACAGATGACTTAGTACATC
TGTTAGGACAATGTAAAACTGTGTAACCCATTTTTCCTTTGGAGTACCTG
TGGGTGGCTATTGTAATTCCAGGCATACAGTATTCACTGTCAGGGTGCCC
CTGGCAATGGAGTAAATAACTCCAGGTAAATAACAGAGACTGCAACCTAA
GACTGCAGGAAAACTATTCAGTAATTCTGCTGATTAAGTAAAATTTTAAA
AAAGGAAATAGGTTTTTTTTTAAGATGGCCCATCAGGTCAAGGTTCCTGC
TGCCAAGCCTGAAGACCTGAGTTCCATCCCCAGGACCCATGTGGTAGAAG
GAGAAACTTGACCCCCCCGAGTTATCCTAACCCCCACATTCGTGCACTGT
AGCACATGTGTGCTCTGCACCTCAAATAAGTAAAATACAGCATTTTAAAA
ACCATTGAGAGCTCTGCATGACCAGCCTGAGGGAAGACTGGCTTGTGTGA
GTGACAGCTGATAAAAGACAAGGCCAGGAGTCATTAAAATCCTGGGAGAA
AGCACAAAGCCTCATACACTATGATAAGATCAACCTGCAAACTTTCAGGA
TAACTAAACACTTTTAGACTGCAGAAGACAGACGTCTCTCTATAGCCACA
GAAGCCTTCATGTAACAAACTACTGTGACCTGATTGTGTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCTAGGGGTTGGCAGTGTAGATGGGATAGGG
GAATTCTAAACAGGCATTTGTCTGCAGCCTCAAAGAGCTGCTTCAGGTGA
GAGGAGCAGGGTTTAAAGACAGCTGTTAGAAAACATTTTAGATCAGATAG
ATTCATGCTGCCCATGGTTTTAAGAAGAAAGAACTTTGGATAAGGAAACC
TGGGGGAAAATTGGACAAGTTCTGAGAACCACCCAGGAAGACTCTATCGT
CCTCTGCCTCTGGGCACTTATAAAAGATGCTGTTGATGAAGAGACCTCAG
AGGCATTAGCTAACTCCCAGGGATTGCTTGAAGAACTTCAGGAGGACTGC
CTGTCAGAGAGCTCCCCCACAAAAAGGCTCTCTCAACTCTAAATCAGAGA
AGTACAGAGACACTGATGATGAGCTAGCTTCAGAGGAGGAAGCTCATTTA
GAAAAAGGGGCTGCCAAATATGGTGAGGATTGGCCTCCTTACATACCTTC
TGCTCTGCCTATGACCTCTACTGCAGGAGATGCTGCCCAGATGGATATGC
AAGTATATAAGTTAGAGTTGGAATTAAGCTGACTAATGAGCTACAGGAGC
TCAAGTATGTATCAGGTGCAGGATAAAGCTACGATTCTGAGATACTCTAT
CACCACTATAAAGAGCTGTGGATCAGGCTCGAGGGGTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_c14.b1 MSMg01no327_c14.b1 CHROMAT_FILE:
MSMg01no327_c14.b1 PHD_FILE: MSMg01no327_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:00 2005
         (372 letters)



>mm_chr8_74673691_74674463
          Length = 773

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/371 (98%), Gaps = 1/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcagatgatgt-tacataaaagactttgctactagatacagatgacttagtacatc 61
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcagatgatgtacacataaaagactttgctactagatacagatgacttagtacatc 416

                                                                       
Query: 62  tgttaggacaatgtaaaactgtgtaacccatttttcctttggagtacctgtgggtggcta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgttaggacaatgtaaaactgtgtaacccatttttcctttggagtacctgtgggtggcta 356

                                                                       
Query: 122 ttgtaattccaggcatacagtattcactgtcagggtgcccctggcaatggagtaaataac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttgtaattccaggcatacagtattcactgtcagggtgcccctggcaatggagtaaataac 296

                                                                       
Query: 182 tccaggtaaataacagagactgcaacctaagactgcaggaaaactattcagtaattctgc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tccaggtaaataacagagactgcaacctaagactgcaggaaaactattcagtaattctgc 236

                                                                       
Query: 242 tgattaagtaaaattttaaaaaaggaaataggtttttttttaagatggcccatcaggtca 301
           |||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||
Sbjct: 235 tgattaagtaaaattttaaaaaaggaaataggtcagtttgtaagatggcccatcaggtca 176

                                                                       
Query: 302 aggttcctgctgccaagcctgaagacctgagttccatccccaggacccatgtggtagaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aggttcctgctgccaagcctgaagacctgagttccatccccaggacccatgtggtagaag 116

                      
Query: 362 gagaaacttga 372
           |||||||||||
Sbjct: 115 gagaaacttga 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)