BAC Information

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BAC

Clone NameMSMg01-329F24
Chromosome8 (Build37)
Map Location 15,113,518 - 15,113,861
singlet/doubletsinglet
Overlap geneMyom2
Upstream geneDlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433
Downstream geneEG665599, EG234097, EG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329F24.T7 (MSMg01no329_f24.b1)MSMg01-329F24.TJ (MSMg01no329_f24.g1)
ACCAG446226AG446227
length747742
length of high quality
(start - end)
344 (72 - 415)331 (80 - 410)
definitionCHROMAT_FILE: MSMg01no329_f24.b1 PHD_FILE: MSMg01no329_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:48 2005CHROMAT_FILE: MSMg01no329_f24.g1 PHD_FILE: MSMg01no329_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGA
ATTCTCAATTTCTTGCATGACTGCTTCACTCTCTCCCACACTTCCCTGTC
AGCCTCAACTGTCCTTTTAACAAGTGGGTTCCATGGGGGAGGACCGTGGC
TGGAGCAAACTGCTAGTGTGTTAAATATTAAGCCCCTTATCTATCCTTCA
TTTTCATGTCCTCAAAGGAAGTCTTGGTGATTAAAATCCCGCTTACAGAC
TTACGGATGCACGGGTCAAAACTGATAACATTTATTTTCTTAATTTTAGA
ACTTGAGCGTTTGATGGCACTGAGCAATGAGATAAAGAACCCCAGTAAGT
AATCCCCCTGCCTCATACGTGAATTTGCAGGAGGAGGGGGGCCTTCACTA
GGCTTAGAGTGACCCACCCCCCCTACTTGTCAGCTTATGATATAGAAACT
TACCTATCTGTTCCTAATCCAAGCTGGCTGTCTAGCAAAGGTCATCTCCC
AGGGCCACTCCTCAACCTTTGAGCGTGACCAGATTGCTGTAAGGAACTCA
TCAAACTGGAGGCTTGTTGCCATGGTCCCGGGCAATATTCCACTACTTCT
TTAACTGTTTAGGACCTGGGCTTGGCGTTCTCTCACAATCTGGCGCTGAC
TACCTGATTTAGGATCTATTCCCCTCTGACTTTATATTTCACTCCCTCCT
CTACCAATCCCACCGAATACCGAAATAGCTTATGATATTTTCCATAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGAAAACTTACAGAAGATCTTGTATGGCTGAGAAGCAC
TTGAAGAAATTTTCACTCTCCTTATTCTCAGGAAAATGCAGATCAAAGTG
ACCCTGAGATACATCTTATATACATCAAAATGGCTAAGATAAAAAACTCA
AGGAGTAGCTTATGAAGATATGGAGCAAGGGGGGAACTTGTCCATTGCTG
GTGGGAGCGAAAGTTGTACAACCACTTTGCAAATCAATTTGGTGGTTTCT
CTATAAACAAAATAGTTTTATGTCAAGACCCAGAAATACCACTCTTGGGC
ATATACCCAAAAGATGCCCCACTACACCACAGGGACACTTGCTCATCTAT
GTTCATTGCACCCCCCACCACCAATAACCCAAAGCTGGAAACAACCTAAA
TGTCCCTTAACTGAAAAATATATATAGAAAATGTGGTACATCTACATAAT
GAAATACTATTCAGCTATTAAAAATAAAGACATCACAAATTTGCTAGGCA
AATGGGTGGAAGTTGAGAATATCATCCTGAGTGAGGTAACCCAGAGCCAA
AAAGACACATATGGTATGTATCCACTGATAAGTGGACATTAGCCATAAAG
GGCAGGATAACCATACTACAATCCATAGACCCAAAGACACTGGGTACTAA
GGAGGGCCCAAGGGAGGATGTATGAGTCTCACTCTGAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_f24.b1 MSMg01no329_f24.b1 CHROMAT_FILE:
MSMg01no329_f24.b1 PHD_FILE: MSMg01no329_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:48 2005
         (344 letters)



>mm_chr8_15113318_15114061
          Length = 744

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%), Gaps = 2/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttcactctctcccacacttccctgtcagcctcaactgtccttttaacaagtgggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttcactctctcccacacttccctgtcagcctcaactgtccttttaacaagtgggttc 260

                                                                       
Query: 61  catgggggaggaccgtggctggagcaaactgctagtgtgttaaatattaagccccttatc 120
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 catggcggaggaccgtggctggagcagactgctagtgtgttaaatattaagccccttatc 320

                                                                       
Query: 121 tatccttcattttcatgtcctcaaaggaagtcttggtgattaaaatccc-gcttacagac 179
           |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct: 321 tatccttcattttcatgtcctcaaagcaagtcttggtgattaaaa-ccctgcttacagac 379

                                                                       
Query: 180 ttacggatgcacgggtcaaaactgataacatttattttcttaattttagaacttgagcgt 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatggatgcacgggtcaaaactgataacatttattttcttaattttagaacttgagcgt 439

                                                                       
Query: 240 ttgatggcactgagcaatgagataaagaaccccagtaagtaatccccctgcctcatacgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgatggcactgagcaatgagataaagaaccccagtaagtaatccccctgcctcatacgt 499

                                                        
Query: 300 gaatttgcaggaggaggggggccttcactaggcttagagtgaccc 344
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaatttgcaggaggaggggggccttcactaggcttagagtgaccc 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)