BAC Information

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BAC

Clone NameMSMg01-329G24
Chromosome8 (Build37)
Map Location 15,113,517 - 15,113,769
singlet/doubletsinglet
Overlap geneMyom2
Upstream geneDlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433
Downstream geneEG665599, EG234097, EG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G24.T7 (MSMg01no329_g24.b1)MSMg01-329G24.TJ (MSMg01no329_g24.g1)
ACCAG446274AG446275
length782761
length of high quality
(start - end)
254 (73 - 326)484 (76 - 559)
definitionCHROMAT_FILE: MSMg01no329_g24.b1 PHD_FILE: MSMg01no329_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:53 2005CHROMAT_FILE: MSMg01no329_g24.g1 PHD_FILE: MSMg01no329_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACAGATCCGCGG
AATTCTCAATTTCTTTCACCGTCTGCTTCACTCTCTCCCACACTTCCCTG
TCAGCCTCAACTGTCCTTTTAACAAGTGGGTTCCATGGGGGAGGACCGTG
GCTGGAGCAAACTGCTAGTGTGTTAAATATTAAGCCCCTTATCTATCCTT
CATTTTCATGTCCTCAAAGGAAGTCTTGGTGATTAAAATCCCGCTTACAG
ACTTACGGATGCACGGGTCAAAACTGATAACATTTATTTTCTTAATTTTA
GAACTTGAGCGTTTGATGGCACTGACCTTTGAGATAAAGAACCCCAGTAA
GTAATCCCCCTGCCTCATACGTGAATTTGCAGGAGGAGGGGGTCCTTCAC
TAGTCTTATAGTGATTGTCCCCCCCCCCCCGCCATATTATGACCTATAAT
CTTACCTATCTGTCCCTAATTCTTTTTGGCTGCCTAGTACAGGTTTTTTC
CCATTCCCACTCCTCCTTCCTTTTTCGTTGATTCCATTTCTGCCTCCTTC
TTTTTATATTGTCCCCTTCTCCGCCACGCTTCTTTTTACCTCTCCTTTTT
TTTTTTTTTTCCCCCCCTTTCTTTCCCTTTTCCCCCCTTTTTCTCCATTC
TTCCCCCATTTCCTCCTCCCTCCCCCCTCCTCCCCTTTTTTTTTTTTCTC
TTCCCCCCTTTTTTATCACCTATCATTTTTACTCCTTTTCGTCTTTCACT
CTATCCTTACTTCCTTTACTCATACCTCCTTT
NCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAACAGAAGAATCTTGTATGGCTG
AGAAGCACTTGAAGAAATTTTCACTCTCCTTATTCATCAGGAAAATGCAG
ATCAAAGTGACCCTGAGATACATCTTATATACATCAAAATGGCTAAGATA
AAAAACTCAAGGAGTAGCTTATGAAGATATGGAGCAAGGGGGGAACTTGT
CCATTGCTGGTGGGAGCGAAAGTTGTACAACCACTTTGCAAATCAATTTG
GTGGTTTCTCTATAAACAAAATAGTTTTATGTCAAGACCCAGAAATACCA
CTCTTGGGCATATACCCAAAAGATGCCCCACTACACCACAGGGACACTTG
CTCATCTATGTTCATTGCAGCCCCATTAGTAATAACCCAAAGCTGGAAAC
AACCTAAATGTCCCTTAACTGAAAAATATATATAGAAAATGTGGTACATC
TACATAATGAAATACTATTCAGCTATTAAAAATAAAGACATCACAAATTT
GCTAGGCAAATGGGTGGAAGTTGAGAATATCATCCTGAGTGAGGTAATCC
AGAGCCAAAAAGACACATATGGTATGTATCCACTGATAAGCGTACATTAG
CCATAAAGGGCAGGATATCCATACTACAATCCATAGACCCACAGTAACTG
GGTACCATCGAAGGCCCACGGCAGGATGTATGAGTCTCACTCTTAAGACA
ACCCTTCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g24.b1 MSMg01no329_g24.b1 CHROMAT_FILE:
MSMg01no329_g24.b1 PHD_FILE: MSMg01no329_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:53 2005
         (254 letters)



>mm_chr8_15113317_15113970
          Length = 654

 Score =  445 bits (230), Expect = e-129
 Identities = 248/254 (97%), Gaps = 2/254 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcttcactctctcccacacttccctgtcagcctcaactgtccttttaacaagtgggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcttcactctctcccacacttccctgtcagcctcaactgtccttttaacaagtgggtt 260

                                                                       
Query: 61  ccatgggggaggaccgtggctggagcaaactgctagtgtgttaaatattaagccccttat 120
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ccatggcggaggaccgtggctggagcagactgctagtgtgttaaatattaagccccttat 320

                                                                       
Query: 121 ctatccttcattttcatgtcctcaaaggaagtcttggtgattaaaatccc-gcttacaga 179
           ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct: 321 ctatccttcattttcatgtcctcaaagcaagtcttggtgattaaaa-ccctgcttacaga 379

                                                                       
Query: 180 cttacggatgcacgggtcaaaactgataacatttattttcttaattttagaacttgagcg 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttatggatgcacgggtcaaaactgataacatttattttcttaattttagaacttgagcg 439

                         
Query: 240 tttgatggcactga 253
           ||||||||||||||
Sbjct: 440 tttgatggcactga 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)