BAC Information

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BAC

Clone NameMSMg01-329K12
Chromosome8 (Build37)
Map Location 12,894,875 - 12,895,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
Downstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329K12.T7 (MSMg01no329_k12.b1)MSMg01-329K12.TJ (MSMg01no329_k12.g1)
ACCAG446424AG446425
length896734
length of high quality
(start - end)
172 (102 - 273)408 (77 - 484)
definitionCHROMAT_FILE: MSMg01no329_k12.b1 PHD_FILE: MSMg01no329_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:11 2005CHROMAT_FILE: MSMg01no329_k12.g1 PHD_FILE: MSMg01no329_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCCTTTCCCCAAACCCCCCCTATACCGCTTTCGCGGTGATCNCGGT
TTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTATGTCACCTAGACTATCCTCAAATTCATGGTTATCC
TCCGGCCTCAGGCTCCTGAGTGTCCTGGAATTACAGGGGGTACCACACCT
AGATTTATTGTATTTTTGAAATTTATTATTTTGTGTATGTGTGTGTGTGT
GCGCATGTGTGTGGTGTGATTTTGTCCGTACCCTACGTAGATAGATCTTC
TTTTATTTGACGATCATTGCCATCTCTACGATTGTAGTCCCAATTTACTC
GCGATCCTTTTACGCACCCTTTTTTTTCTAACCTTTATTTACCACAGTGT
ACTACTTATTGCGATTCTATTCTTCTTCTGCCCATCGAAGCATAATAGTC
TTCTTTTTTGGTGTTGCCTTTTCCCCCCCCCTTACATAAACTTTTTTCCC
CCTCTCCTTTTTCCCCCCTTTTCTTTTCTTAGACCCCATCACTCCGTAAT
TTTTTTATTGTTTCCCCGCCTGACCATCTTCCAATTTCTTCCTTTTCTCG
CCTTTTTCTTCCCCCCTCTTTTTTTTTTTTTTCCCCCTCCTCCCCCCCTC
CTTTTTTTTTTTCCGCCTCCTTTGCATTTTCACATCTTCACCCCCCCTTT
TTTTTTCCCCTTTTACCCCCTCTTTTATTCTCCTTTTCCTACTACCCTTT
TTACCCCTTCCTCTCCCCCCTTACCTCACCCTTTTTTTTTCTTTTCCCTT
ATCACCCTCCTTTTCTTTTCTCTCCTCTCCCTTATTACCTCCCTATTACC
CTGTCCAAAGTGCTACCTATCGTATAGTTATCATACTACTTATTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGCCTGTGCCCTGAACAGAGC
TGGCGCCTCCCTAGTGCATAACCTCATAATCATTTGGTCACGGTGGAGCC
CTGCCTGTCCGAGCTCCCTGTCCTGCCTTGTGAATCCAGGGAGCAGGTCC
AGATCCGGTTTCTTTCCAGGCAGGGAAAAGCTGCTGGCCAGTCCCAAGGA
GGCCTCTGAGATAGCATGCCAAGAAATGTCATCTGGGGCATGTGTCACCA
TCGTGCATCAGGAGAAGGTAGGTGTGTCCATGACAGATCCACTGCTCCTA
CCCACCCCCTCCACCATATCTCCCATTCCCCTTTTACTCAGGACTGCACA
TCTGCCAGTACCCCGCCTGGGAGCTGGCTGTGGGCAGAATTCCCTGACTA
AGTCTCTTTGAGAAGGAAGGAACCTCTGCATGGACAGTTATCGGGGCCTC
CCTCCTTATCATCACGCGTGATGGTGGGGTTTGCCTATAGCATCTTTCCC
ACGTCTACGACGATCCTGTGCTTATGCTGACCGGTCTGTCCCATGACTTG
CTTTTTGTCCCGTCCTCCGGTTGCGTCCCTGATACGCCTTTGATGCTGTA
TAACAACTTCTGCTTCCCATCCTGTCTTTCCTCCTTTCTCCCCCGTCTTT
ACCCCCCCCTCTCCCTTTTATCCCTCCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_k12.g1 MSMg01no329_k12.g1 CHROMAT_FILE:
MSMg01no329_k12.g1 PHD_FILE: MSMg01no329_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:11 2005
         (408 letters)



>mm_chr8_12894675_12895481
          Length = 807

 Score =  735 bits (380), Expect = 0.0
 Identities = 401/408 (98%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggcctgtgccctgaacagagctggcgcctccctagtgcataacctcataatcatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 catggcctgtgccctgaacagagctggcgcctccctagtgcataagctcataatcatttg 260

                                                                       
Query: 61  gtcacggtggagccctgcctgtccgagctccctgtcctgccttgtgaatccagggagcag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacagtggagccctgcctgtccgagctccctgtcctgccttgtgaatccagggagcag 320

                                                                       
Query: 121 gtccagatccggtttctttccaggcagggaaaagctgctggccagtcccaaggaggcctc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gtccagatccggtttctttccaggcagggaaa-gctgctggccagtcccaaggaggcctc 379

                                                                       
Query: 181 tgagatagcatgccaagaaatgtcatctggggcatgtgtcaccatcgtgcatcaggagaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 tgagatagcatgccaagaaatgtcatctggggcatgtgtcaccatcttgcatcaggagaa 439

                                                                       
Query: 241 ggtaggtgtgtccatgacagatccactgctcctacccaccccctccaccatatctcccat 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggaggtgtgtccatgacagatccactgctcctacccaccccctccaccatatctcccat 499

                                                                       
Query: 301 tccccttttactcaggactgcacatctgccagtaccccgcctgggagctggctgtgggca 360
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 500 tccccttttactcaggactgcacatctgccagtaccctgcttgggagctggctgtgggca 559

                                                           
Query: 361 gaattccctgactaagtctctttgagaaggaaggaacctctgcatgga 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattccctgactaagtctctttgagaaggaaggaacctctgcatgga 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space:   318402
Effective search space used:   318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)