BAC Information

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BAC

Clone NameMSMg01-330E11
Chromosome8 (Build37)
Map Location 87,101,744 - 87,101,891
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneGpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E11.T7 (MSMg01no330_e11.b1)MSMg01-330E11.TJ (MSMg01no330_e11.g1)
ACCAG446879AG446880
length805824
length of high quality
(start - end)
148 (124 - 271)---
definitionCHROMAT_FILE: MSMg01no330_e11.b1 PHD_FILE: MSMg01no330_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:57 2005CHROMAT_FILE: MSMg01no330_e11.g1 PHD_FILE: MSMg01no330_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCACAAGTTCCCCCCTCTGAGGGGTTTCTATCTAGGCCTGACATCTGA
TCTCTCTGGAATAGTTCCCCCCCGACAGAGCCCATAGCTTTCTAGGGAGG
CACCAAGAAAGGGAGGAGAGCAGCTAAGTGGATGTTGCAGTGCTGTGCAA
AGCCAGACAGTAGGCACACCCATCATTCCAGCACTCAGGAGCATGAGGTC
ATAGGACCTCATAGCCAACATGGACTACATGGTGAAACATTGTCTTAAGG
AGAGATGGCTAAGTTGGTGATTGCTCCTGCTACCAAGCCTGACAACCTGA
GTTCAACTCTTTTTTTTTTTACGCCCCCCCCCCCCGAATAGATTCCCAAA
TGTTGTCCTCTGACACGCATGCTGTGACACAAAAAAAGCTCACACTTGTA
GCGTGGGCTTTCTAGCTAGCCCGACTATGGTGGTGCTCACCTTTTACCCC
GTACTAACGAGGCCGAGTCTGCCTGATCTCTGATACCAGTCTGATCCATA
TAGAGCTCTACATGTACTGCCCTAGCTACTCCTTACTACAACACATACGA
AGATTTTTTAAGTGTTTCATGCCGGTAGTACCCCCTATTAATCCCTGTAC
CCTCCCCCCAATAAAATTGCATTTGTAACCCTTGGCCTGGCTTCGGATTA
ATCCCGTATTATTTTCCCCCCGCGGATTCCCCGCCTTTTTCTCCTCCTCG
TCTCTTTAACCGGTCGCCCACATCCGTACATATTTATCCATAAATGTAAT
TTATT
NNNCCCCCTTTTTTATTCCCCATTATNNCAAGATANNNTTAAGAATGAAT
GGGAAGCATGGNGGAAGCTGGGTGCAAAAGAGAGGGANNNANNGNNGGTT
GACAAAAAAAGGGGNNNNNNANNNNNNANNNNNNGNNGGNNNGNGGNNNN
NTTTGGAGGCAGGGAAAGGGGAAAGAGGAGGAAGGGGAGAGAAGGNAAGN
AAGGAAAAAGAAAGAANAAAGGAAAAAAGAAAGAGGAAGGAAAGAAGGAA
GGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAGGTGTTTGTGAGGTA
GTAAAGAGTGTGTAAAGAGGTGAGTTAAGGGANTAGAGAGGAAAAGGGAG
GGAGTTTTTTTTTTAAAGAAGAAAGAAAGGAAAAAGAAGAGAGATTTTTT
GTGTTTTTAACCACCCCACCACAAGAGAGAGGGAAAAAGGGAAGAGAGGA
AAAGGGGGGGAAAGAAAAAAAAAAAAAANGGGGGGGGGGGGGGGGGGGNN
CNCNNGGGGNGAGGGCGGGAGGGAGAAAAAGAAGGGGAAGGAAGAGAAGA
AGGGGAAAGAAAAGGAGGAGAAAAAAAGAGAGGGAGGGGAAAGGAAAGAA
AGGAAGAAGGGGGGGGAGAGAAGGAAAAAAGAAGAAGGAGAAGAGAAAAA
AAAGAGAAAAAAGACAAAAAATGAAAAAAAAAAAAAAAAGAGGAAAGAAA
AAGAACGAAATTGGTTTTTTATAAAGGGGGGAAGGAAAAGGAAGGAAAAA
ATAAGGGAGAAAGAAAAAGATAAAAATGAAATGAGAATAAAAAAATAAAA
AGTAATAAAAAGAAATATGTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e11.b1 MSMg01no330_e11.b1 CHROMAT_FILE:
MSMg01no330_e11.b1 PHD_FILE: MSMg01no330_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:57 2005
         (148 letters)



>mm_chr8_87101544_87102091
          Length = 548

 Score =  271 bits (140), Expect = 2e-77
 Identities = 146/148 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagagcccatagctttctagggaggcaccaagaaagggaggagagcagctaagtggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagagcccatagctttctagggaggcaccaagaaagggaggagagcagctaagtggat 260

                                                                       
Query: 61  gttgcagtgctgtgcaaagccagacagtaggcacacccatcattccagcactcaggagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgcagtgctgtgcaaagccagacagtaggcacacccatcattccagcactcaggagca 320

                                       
Query: 121 tgaggtcataggacctcatagccaacat 148
           |||||||| ||||||||| |||||||||
Sbjct: 321 tgaggtcagaggacctcaaagccaacat 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)