BAC Information

Click to search

BAC

Clone NameMSMg01-330E16
Chromosome8 (Build37)
Map Location 67,880,005 - 67,880,370
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405
Downstream geneVaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E16.T7 (MSMg01no330_e16.b1)MSMg01-330E16.TJ (MSMg01no330_e16.g1)
ACCAG446889AG446890
length756753
length of high quality
(start - end)
370 (387 - 756)316 (386 - 701)
definitionCHROMAT_FILE: MSMg01no330_e16.b1 PHD_FILE: MSMg01no330_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:58 2005CHROMAT_FILE: MSMg01no330_e16.g1 PHD_FILE: MSMg01no330_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCTCCACTCTGAAATCTCAGGAACTGGGCCTCTGCTGCTCACA
TTTCTCTCAGTTGTCTGATCTTCCCAATTCTCCCCAGAATGGCCCATTAA
TCTCTGTTTATACTATTCTCTGGGTTGCCCAGTCCATGGCTGCTAACTCT
TTAATATTTCTTCTGCAAACCAGTTCTAAAAATGTGAGAACCACATGGCC
AGGTTTACCACAGCAAGACTCTGACTTCTCCATGCAACTTCCTATGTTAG
TTATGACTCATTGCTATGACTAAACACCTGCTTAGTCTCAACTTAAAAGA
GTGATGATTTATTTGTATTACTTCATGCCGACTCCATAAACAGTCCATCT
TGACAGAGAAAGCATGGAATCAGAAGCATGCAATAATGTCTCCAGTTAAG
ATAAAGAGAAAAACAAATGGTTCCCCTTAGATCACTTTTGTTTCTATTCA
ATCTGAGACTCCAGCTCATAGGATGGTACTATCCACATTGAGGCTGTTTC
TACCACAAGCAACCCAATATTGTGAACCATCTTTGTAAACATACCCAGAG
TTTTTTCTCCTGTAAGAACCAGTATTTACTTACCAAGCCAGGGTCACCTG
ATACGTTTGGAGAGGCTGCGTTAGAGGGATCCCAGCAAGACTAAAGCTTG
ACAGGTTTATTGCAAGCAATCAGACTTTTTAATTCTCTTATCAACAGAAA
CAGAAN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGTTTAATTCAGTTTTGTTTTTCT
TTGTTTTAACTTTCAGTATTTTGGCCGGGTGAGTGTTGTGGTGGCTGTGA
GGGTATTTCACATAGCACAGGTTGGCCTGAAACTCCTCTCTGTAGGTGAG
CATGACCTTGATCTTCTGCTCCTCCTGCCCCCAACCTCTCAGGACTGGGA
TTACAGATGTGTGCTAACACACTTAGTTCTTGTAGTGCTTGATATTGAGT
CAAGAGGGCTTCATACATGGTATAAACACTCCCAACTGAACGACATCCTC
AACCTTTAACTTGTTTTTAACATGTACCATACCGCTAAAAATAGCACTTC
TTTCTTCTTGAGAATCATGCTTTGGAGCTTTTTCCCTCTTTTTCCTTTTT
TGAAACAGAATTCCACATTGCTGTTTGTTTTCGCTGTTTTGGGATAGGGT
CTCCTATAGCACAGACTGGCTTCAGGTTCTCCCAGTGGGTTTGAATGACC
TTGAACTCTTGATCTTCTTGCCTCCACTCCCAAATTCTGGAATGACATAT
GTGTCCCACCATTGCTGGCTATAAAACACACCATCTTTAGTATGATATAT
GTAAAACTGTAACACAGTAAAACCTAATAGTGACGTTATAGCTTTGGGTC
CTTCAGCTTGTGTGGTCAGAACATTATTCTTGCGCGCACCCAACTGGTCA
GGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e16.b1 MSMg01no330_e16.b1 CHROMAT_FILE:
MSMg01no330_e16.b1 PHD_FILE: MSMg01no330_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:58 2005
         (370 letters)



>mm_chr8_67879637_67880406
          Length = 770

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%), Gaps = 1/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaacagtccatcttgacagagaaagcatggaatcagaagcatgcaataatgtctccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 734 taaacagtccatcttgacagagaaagcatggaatcagaagcatgcaataatgtttccagt 675

                                                                       
Query: 61  taagataaagag-aaaaacaaatggttccccttagatcacttttgtttctattcaatctg 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 taagataaagagaaaaaacaaatggttccccttagatcacttttgtttctattcaatctg 615

                                                                       
Query: 120 agactccagctcataggatggtactatccacattgaggctgtttctaccacaagcaaccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agactccagctcataggatggtactatccacattgaggctgtttctaccacaagcaaccc 555

                                                                       
Query: 180 aatattgtgaaccatctttgtaaacatacccagagttttttctcctgtaagaaccagtat 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 554 aatattgtgaaccatctttgcaaacatacccagagttttttctcctgtaagaaccagtac 495

                                                                       
Query: 240 ttacttaccaagccagggtcacctgatacgtttggagaggctgcgttagagggatcccag 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 494 ttacttaccaagccagggtcacctgatacgtttggagaggctgggttagagggatcccag 435

                                                                       
Query: 300 caagactaaagcttgacaggtttattgcaagcaatcagactttttaattctcttatcaac 359
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 caagactaaagcttgacaggtttattgcaagcaattagactttttaattctcttatcaac 375

                 
Query: 360 agaaac 365
           ||||||
Sbjct: 374 agaaac 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)