BAC Information

Click to search

BAC

Clone NameMSMg01-330N17
Chromosome8 (Build37)
Map Location 48,476,815 - 48,477,119
singlet/doubletsinglet
Overlap gene4930448N21Rik
Upstream geneLOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2
Downstream geneD030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330N17.T7 (MSMg01no330_n17.b1)MSMg01-330N17.TJ (MSMg01no330_n17.g1)
ACCAG447301AG447302
length762811
length of high quality
(start - end)
310 (45 - 354)---
definitionCHROMAT_FILE: MSMg01no330_n17.b1 PHD_FILE: MSMg01no330_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:39 2005CHROMAT_FILE: MSMg01no330_n17.g1 PHD_FILE: MSMg01no330_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGTGCCCTGCTTTCCCAGTTCTTGGATGCTAAAGCACAAGGCAG
GATGAGGGAAAGCAAGCTGTCCCCCTCCTACAGTCTGCCTTGGATCATCC
ACTTTCAGACAGCCATGGCCTGCAGGTGACAGTCTGTAAAAGGGCAGACC
ACCATCGATGGATCTCTGTAGTTACCTTTTCCTTCCAAGGGGAATACCTG
ACAAAGGCTTGACCTACACATGAAGGATGCCAGGGTGGAGAGAGTGAAAG
GGTTATATAAGGGGGTTACTTATTATTTTCCCACACACAAGGAGGGCAAA
GCTGGGATCCTTAGAGTCAGATCNTGACCGAGANCCCCTGTNTCGGNAGG
ACTATTCTCCTTAGCTCNCCNTTGGAAANNGAACCTGAAATGTGTCTCTG
TTGCGACTTCTCAGAAAACGGGGATAAGGGGAACCCCACTAAATTTCAGC
AAAGATTAAATACATCATTTACAATCGCCAGCAGCCAGTTCTGGCATTGC
GCAAACATCAGAGTGTACTTACATTAACCAAGATGGTTGCAGGCTACACA
GCACACCTAGGCTGTGGGGACCGTCATCATATGTGCAGTCTGGTGCTGAC
TGCCTTACACAGCACATTGTTGCACAGAAACAGACTAGCTCGGAATCCAG
CACAGCGACTATCTAGTAAATGGCGGCTTTTAGAGGCTCATTCTCAAGCA
ACAGCGATGGTA
ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGACAGCCAGGGCTATTACACAGA
GAAATCGTATCTTGGGGAATCTTCCCACGGAGGAGGAGGGAGAGGATGAG
GAGGAGGAGGAGGAAGAAGATGAGGTGGTTTATTTTCTTTTTTCTTTTTT
TTTTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTGTTTTCTTTTTTTCT
TTGTCCTCCTGTTCTTTTTTTTTTTTTTTTTTTTATTTCTTTGTTTTCTA
TTAGTGAAAAGTTTTTGGGGTAACTTTTAAAACGGGGTCCTTGTTTTTTT
TTTTTTTTTTTTTGTTTNGGTNTTTCNCGGTTTTTTAAATATATATATTT
TTTTTTGTTGTTTGTTGTTTTTTTTTATTTTTTTTTTTTTTTTTTCTTCT
TTTTTCCTTGTTTTTTTTTATTTTTTTTTTTTTTTCTCTTTTTTTTTCTT
TTTTTTTTCTTTTCTTTCTTTTCTTTTTCTTTTTTTTTTCTTTTTATTTT
TTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTCTTTT
TTTTTCTTTTTTTTTTTTTTTCTTTTTTTCTTTTTTCTTTTGTTTCTTTT
TTTCCTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTTTTTCTTTTTCTT
TTCTTTTTTTTTTCTTTTTTTTTTCCTTTTTTTTCTCTTCTTTCTTTTTT
CTTCTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_n17.b1 MSMg01no330_n17.b1 CHROMAT_FILE:
MSMg01no330_n17.b1 PHD_FILE: MSMg01no330_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:39 2005
         (310 letters)



>mm_chr8_48476611_48477319
          Length = 709

 Score =  476 bits (246), Expect = e-139
 Identities = 291/306 (95%), Gaps = 1/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtgccctgctttcccagttcttggatgctaaagcacaaggcaggatgaggg 64
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattccatgtgccctggtttcccagttcttggacgctaaagcacaaggcaggatgaggg 264

                                                                       
Query: 65  aaagcaagctgtccccctcctacagtctgccttggatcatccactttcagacagccatgg 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 aaagcaagctgtccccatcctacagtctgccttggatcatccactttcagacacccatgg 324

                                                                       
Query: 125 cctgcaggtgacagtctgtaaaagggcagaccaccatcgatggatctctgtagttacctt 184
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 325 cctgcaggtgacagtctgtaaaagggcagactgccatcgatggatctctgtagttacctt 384

                                                                       
Query: 185 ttccttccaaggggaatacctgacaaaggcttgacctacacatgaaggatgccagggtgg 244
           |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccttccgaggggaacacctgacgaaggcttgacctacacatgaaggatgccagggtgg 444

                                                                       
Query: 245 agagagtgaaagggttatataagggggttacttattattttcccacacacaaggagggca 304
           ||||||||||||||||||||||||||||||||||||||   ||| | || ||||||||||
Sbjct: 445 agagagtgaaagggttatataagggggttacttattatgccccccc-cataaggagggca 503

                 
Query: 305 aagctg 310
           ||||||
Sbjct: 504 aagctg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 709
Length adjustment: 9
Effective length of query: 301
Effective length of database: 700
Effective search space:   210700
Effective search space used:   210700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)