Query= MSMg01no331_g06.b1 MSMg01no331_g06.b1 CHROMAT_FILE:
MSMg01no331_g06.b1 PHD_FILE: MSMg01no331_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:17 2005
(485 letters)
>mm_chr8_58963551_58964435
Length = 885
Score = 884 bits (457), Expect = 0.0
Identities = 475/481 (98%)
Strand = Plus / Plus
Query: 5 gaattccatctaaactcatctccttggaagaatcttacttagaatagagaatcctcctat 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatctgaactcatctccttggaagaatcttacttagaatagagaatcctcctat 264
Query: 65 gaattctcagtagatacgtcactgtccctctccggcatgtgtagtgctgactacctacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaattctcagtagatacgtcactgtccctctccggcatgtgtagtgctgactacctacct 324
Query: 125 tctcattccatctgtccttatgatgaaacgcaggaacgggacctatgcaaatacatacat 184
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcattcaatctgtccttataatgaaacgcaggaacgggacctatgcaaatacatacat 384
Query: 185 cagaaatgtccgtggtgataatgtgtatttggggtttcttgttttgtttgtttgttttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaaatgtccgtggtgataatgtgtatttggggtttcttgttttgtttgtttgttttgt 444
Query: 245 ttgtgtttttcttttttcaaggcagggtttctctgtgtagcccgggctgtcctgcaactc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 ttgtgtttttcttttttcaaggcagggtttctctgtgtagcccgggctgtcctggaactc 504
Query: 305 actctgtagaccaggttggctgcaaactcagaagtctacccatctctgcctctacaccac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actctgtagaccaggttggctgcaaactcagaagtctacccatctctgcctctacaccac 564
Query: 365 cgccacgccgctgacagtgtatatttagaatgatgcatgttgatgaggctaagcttttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgccacgccgctgacagtgtatatttagaatgatgcatgttgatgaggctaagcttttga 624
Query: 425 ttttgttggtttgagggttatttgggaagggtcgtttcttctgatactgtatcataatcc 484
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 625 ttttgttggtttgagggttatttgggaagggttgtttcttctgatactgtatcagaatcc 684
Query: 485 a 485
|
Sbjct: 685 a 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g06.g1 MSMg01no331_g06.g1 CHROMAT_FILE:
MSMg01no331_g06.g1 PHD_FILE: MSMg01no331_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:17 2005
(638 letters)
>mm_chr8_59123389_59124426
Length = 1038
Score = 1083 bits (560), Expect = 0.0
Identities = 578/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 55 ggaggagaggggagggggaaaaggagatagaacagagaatggaaccagcctacacagcct 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 ggaggagaggggagggggaaaaggagatagaacagagaatggaaccagcctacacagcct 979
Query: 115 caagaccttccccaagtaacatgattcctccagtgaggctcctccccctaaaggttccat 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 caagaccttccccaagtaacatgattcctccagtgaggctcctccccctaaaggttccat 919
Query: 175 gcctcctcaaacagcgccaccaattggggacctagtgttcaaacacataagcctatgggg 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 918 gcctcctcaaacagcgccaccaattggggacctagtgttcaaacacataagcctat-ggg 860
Query: 235 ggaagtccacatttaagccacctcagtgattttgtccttgcttagcactgctttctttgc 294
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ggaagtccacatttaaaccacctcagtgattttgtccttgcttagcactgctttctttgc 800
Query: 295 agtctgaacattcttattctcatccttagcactaaagaagagtctgtagcaccgcacaac 354
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 799 agtctgaacattcttattctcatccttagcactaaagaagagtctgtagcagtgtagaac 740
Query: 355 gcagaaacaaaaggcgtaataatacaaaacttaagaacaattgtgtagcactaaaatttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gcagaaacaaaaggcgtaataatacaaaacttaagaacaattgtgtagcactaaaatttt 680
Query: 415 agtcataaatgttcaaggaacatctacatcccatccatgatttttaaaagcctattttaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtcataaatgttcaaggaacatctacatcccatccatgatttttaaaagcctattttaa 620
Query: 475 aagaagcagaaaagaaaatataaaaaaatagtaaatactgttactagaactgaaaatatt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagaagcagaaaagaaaatataaaaaaatagtaaatactgttactagaactgaaaatatt 560
Query: 535 tgttaattctggttatttatcaaaatcaatgacctagtgttttcctgaagggtgaaaaac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgttaattctggttatttatcaaaatcaatgacctagtgttttcctgaagggtgaaaaac 500
Query: 595 agtaggtgaataaaagcaatttcttactcaattatctttctaat 638
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtaggtgaataaaagcaatttcttactcaattatctttctaat 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
