BAC Information

Click to search

BAC

Clone NameMSMg01-332B11
Chromosome8 (Build37)
Map Location 25,509,744 - 25,670,353
singlet/doubletdoublet
Overlap gene1810011O10Rik, Indol1
Upstream geneSfrp1, LOC100040931, Zmat4
Downstream geneIndo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B11.T7 (MSMg01no332_b11.b1)MSMg01-332B11.TJ (MSMg01no332_b11.g1)
ACCAG448216AG448217
length1,2981,279
length of high quality
(start - end)		609 (134 - 742)680 (136 - 815)
definitionCHROMAT_FILE: MSMg01no332_b11.b1 PHD_FILE: MSMg01no332_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:11 2005CHROMAT_FILE: MSMg01no332_b11.g1 PHD_FILE: MSMg01no332_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,669,749 - 25,670,353)(25,509,744 - 25,510,423)
sequence
NCCCGCGGCTCCCTGGNNNCCATTGGCGCTAAGACTCCTAAGGGAGXXXX
XXXXXXXXXXXXXXXXXXGTTGGNNTTCCTTCATAGCCCCCCGNTGGAAN
ACTGGGGGAGGCTTACCCATTAAAAAATTCAACCTTTAAAGGNACTTATA
ATAAAACAATACTAAAAGAGAGCATGTGCATCCATATATCAGACTAACAC
GGGGATAGGGTATGAGTATACAGGTTATGAGAATGCCAAGGTTCTAGGAG
GTTGAGTTTCCTTGAAACTCTTTGCCTCCATGAGTGCTTCCAGGCCTCTC
GGCCTGTCAAGCAGACTTCACTGGAGTGGGTATAGCAAACTCTGTATCGA
TGCCCTTGATCTTCTGATTATTGCCTTTCATAAAATTATCTTACATTTTG
ACTGCCATATGGTCTTTCTCTATGGCTCATTGAACCCCGAGAGTGTTCTT
TTTATCTGTGCCAGTGGAGTCAGTTCCTGTGCCTACCGTGTAAATATCCC
CAGTGTGCTAATCTAGGCTTTCCTTGGTGTTTCGGTTTGCATAACCTTAA
GAAGCACTGGCCACACTCTGTGCTTTCTCTTTTAGTGACTTCTGAGTCAC
ACTTCTTGGCACATCATTTGAATTTCTACAGAAGTGGAAGCTGAATTGAT
TGAGAACTAGCTTTTTGCCTACTCTGATCTCTACTTGCATTTCCTGTATG
TGCTCTGACCCATTGCATGGCTGCTCTGTTCATAAACACGGNCATGGNTT
TCACCCCATTTCTTCATAACTCAGAGGCCCTATGGGCTCCATCCATGTTT
TGTGTACAAANTTTTATTTTTTTATTTTATTTTATTTTGGGTTTTCGAGA
CAAAGAAATCTCTGTGTAGTCCTGGGTGTCCTGGGAATCACCCTGGAGAC
CAAAATGGCCCCCCCTCCAAAACATGCTGCTTCTGCCCCCCAGAGGTGGG
ATAAAAGGGGGCTGGACCCCCCCCGCTCCCGGTCTTTTTTGAAAGGCAAA
AAACTTCTTTGTAAGCAAAAGTTTCTCTGAAAAACCACCACGTGGTTGTT
TTTTAATTGAACCAAAAGGGGGGGAGAGTTCATAAAGTCGATCTAAATAA
AGAGCTATGGGGGGCAGTCTATTTCCTTTTTGGGTGATGGGGACCCGGCG
GCGGCGGAATCAAAGGTCCNAAAATTTAAAAAAAACTGTCTTTATTAATT
TAGGGGGAAAGGTGCGGTTAATCCCAAGAAAAAAAAAAAAAGTGTGTGTT
AAACCGCNNNNNNNNAANTNANNNNAAGTATTGTGTTGGTTGTTGGTT

CCCGCTCTCTNNNNNACTGCATGGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAAGCTGCGGAATGGAGA
GNCCCGAGNCCTACAATCCCCTTTAAAAGATCTACTATGAAAGATCAGTT
TTAAGAGCAAGAGGAACAACCTCTTTAGGTTTTTTTGTTCCAGAAGCATC
TCAAAACAGAAAGGTTGCAGAAGGCTAAACCTAATCTTTAGTGGTGTTGA
CCGTGCCTTCTCTCGCCACAGCACACCACGGCAAAGACCCCTGAGGCAGC
TGCCCTTCCCTCTATTCCCATAACACCCAGTAAACGACAAATGAAAGCAT
GAAGACCTTTCCCCATTATGACACAAGCAAAATTGGCCAGATCCCAGAGG
ATTGGCATCTGTTTTGGCTTCTGAATTCTCCTTCTGCTGGAATGTAGAAA
TTACCCCAGGGTGATTCAGTCCTGTCTCACCAGCCCTTGAGATGACATGG
CAACAGACGTCACAGCATGGCTCTGGAAATCACTCTTACCCCTGGCTATG
TTTTGCAAGCCCCCAACACAGCTGACAAATCTCAGAGCAGTACCTCCTCC
TGCATCCTTAGAGACACAGTCTCAGAGCTCAGTGAACTGTAGAGTGGTGT
TTCTCAACCTGAGAGTCATGATCCCTTTGTGTGTTGGGGGGGAGGGGGTC
AAACTATCCTTTTGCAATGGTTGACTAAGACCATTGGAAAACACATACTT
ACCTTGTGATCCATAACAGTAGCAAGATTACAGTTATGAAGTAGCAACAG
AAATAACTCTACAGCAGAGGGTCACCACATCTTGAGGAACTGTATTAAAG
GGTTGCAGTATTAGAAAGGTTGAGAATCCCTGGTGCAGAATATTGATGAT
CATAGATATGAGATTTTTCTATAAACTTTGTTATTTGCCCCCCTGAATTA
AAAAAAAACAGATTGAATAAAATATCACGAGCCAGAAACTACCCCTATCA
CCCCCCACATAGATTTTTAGAGGCGGCGGATGGTACAAGCAGTAATTTAG
AACCCAAAGGCCTTAAAACAGAAAGAAGGGCCCTCGTTACTTAACCAAAA
TAAATGGTCGCCTTGGAAGTGTTTTTTTCAAAAAACTGAATTTTCAAGTC
CATGGCTATGGGTCTGTTCTTTGACCCCCAGGGAAATACGGTTTTCTGTA
CCCGCGAGAGGGTTCTTTTTAAAGGCCCTATGCGCCATATGTTTTNTAAA
TTATATTCTCTACTCCTCACTTACCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b11.b1 MSMg01no332_b11.b1 CHROMAT_FILE:
MSMg01no332_b11.b1 PHD_FILE: MSMg01no332_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:11 2005
         (609 letters)



>mm_chr8_25669345_25670353
          Length = 1009

 Score = 1149 bits (594), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    taaaggnacttataataaaacaatactaaaagagagcatgtgcatccatatatcagacta 63
            |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1009 taaaggcacttataataaaacaatactaaaagagagcatgtgcatccatataccagacta 950

                                                                        
Query: 64   acacggggatagggtatgagtatacaggttatgagaatgccaaggttctaggaggttgag 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  acacggggatagggtatgagtatacaggttatgagaatgccaaggttctaggaggttgag 890

                                                                        
Query: 124  tttccttgaaactctttgcctccatgagtgcttccaggcctctcggcctgtcaagcagac 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  tttccttgaaactctttgcctccatgagtgcttccaggcctctcggcctgtcaagcagac 830

                                                                        
Query: 184  ttcactggagtgggtatagcaaactctgtatcgatgcccttgatcttctgattattgcct 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  ttcactggagtgggtatagcaaactctgtatcgatgcccttgatcttctgattattgcct 770

                                                                        
Query: 244  ttcataaaattatcttacattttgactgccatatggtctttctctatggctcattgaacc 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  ttcataaaattatcttacattttgactgccatatggtctttctctatggctcattgaacc 710

                                                                        
Query: 304  ccgagagtgttctttttatctgtgccagtggagtcagttcctgtgcctaccgtgtaaata 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 709  ccgagagtgttctttttatctgtgccagtggagtcagttcctgtgcctaccttgtaaata 650

                                                                        
Query: 364  tccccagtgtgctaatctaggctttccttggtgtttcggtttgcataaccttaagaagca 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  tccccagtgtgctaatctaggctttccttggtgtttcggtttgcataaccttaagaagca 590

                                                                        
Query: 424  ctggccacactctgtgctttctcttttagtgacttctgagtcacacttcttggcacatca 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  ctggccacactctgtgctttctcttttagtgacttctgagtcacacttcttggcacatca 530

                                                                        
Query: 484  tttgaatttctacagaagtggaagctgaattgattgagaactagctttttgcctactctg 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  tttgaatttctacagaagtggaagctgaattgattgagaactagctttttgcctactctg 470

                                                                        
Query: 544  atctctacttgcatttcctgtatgtgctctgacccattgcatggctgctctgttcataaa 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  atctctacttgcatttcctgtatgtgctctgacccattgcatggctgctctgttcataaa 410

                 
Query: 604  cacgg 608
            |||||
Sbjct: 409  cacgg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_b11.g1 MSMg01no332_b11.g1 CHROMAT_FILE:
MSMg01no332_b11.g1 PHD_FILE: MSMg01no332_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:11 2005
         (680 letters)



>mm_chr8_25509544_25510623
          Length = 1080

 Score = 1261 bits (652), Expect = 0.0
 Identities = 673/680 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaagatcagttttaagagcaagaggaacaacctctttaggtttttttgttccagaa 60
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 201 tatgaaagatcagttttaagagcaagaggaacagcctctttagttttttttgttccagaa 260

                                                                       
Query: 61  gcatctcaaaacagaaaggttgcagaaggctaaacctaatctttagtggtgttgaccgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatctcaaaacagaaaggttgcagaaggctaaacctaatctttagtggtgttgaccgtg 320

                                                                       
Query: 121 ccttctctcgccacagcacaccacggcaaagacccctgaggcagctgcccttccctctat 180
           ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||
Sbjct: 321 ccttctctcgccacagcacaccgtggcaaagacccctggggcagctgcccttccctctat 380

                                                                       
Query: 181 tcccataacacccagtaaacgacaaatgaaagcatgaagacctttccccattatgacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tcccataacacccagtaaacgacaaatgaaagcatgaagacctttccccattatgacacg 440

                                                                       
Query: 241 agcaaaattggccagatcccagaggattggcatctgttttggcttctgaattctccttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaaattggccagatcccagaggattggcatctgttttggcttctgaattctccttct 500

                                                                       
Query: 301 gctggaatgtagaaattaccccagggtgattcagtcctgtctcaccagcccttgagatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggaatgtagaaattaccccagggtgattcagtcctgtctcaccagcccttgagatga 560

                                                                       
Query: 361 catggcaacagacgtcacagcatggctctggaaatcactcttacccctggctatgttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catggcaacagacgtcacagcatggctctggaaatcactcttacccctggctatgttttg 620

                                                                       
Query: 421 caagcccccaacacagctgacaaatctcagagcagtacctcctcctgcatccttagagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagcccccaacacagctgacaaatctcagagcagtacctcctcctgcatccttagagac 680

                                                                       
Query: 481 acagtctcagagctcagtgaactgtagagtggtgtttctcaacctgagagtcatgatccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagtctcagagctcagtgaactgtagagtggtgtttctcaacctgagagtcatgatccc 740

                                                                       
Query: 541 tttgtgtgttgggggggagggggtcaaactatccttttgcaatggttgactaagaccatt 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 tttgtgtgttgggggggagggggtcaaactatcctttcgcaatggttgactaagaccatt 800

                                                                       
Query: 601 ggaaaacacatacttaccttgtgatccataacagtagcaagattacagttatgaagtagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaaaacacatacttaccttgtgatccataacagtagcaagattacagttatgaagtagc 860

                               
Query: 661 aacagaaataactctacagc 680
           ||||||||||||||||||||
Sbjct: 861 aacagaaataactctacagc 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |