Query= MSMg01no332_f19.b1 MSMg01no332_f19.b1 CHROMAT_FILE:
MSMg01no332_f19.b1 PHD_FILE: MSMg01no332_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:43 2005
(640 letters)
>mm_chr8_122646647_122647686
Length = 1040
Score = 1139 bits (589), Expect = 0.0
Identities = 632/657 (96%), Gaps = 17/657 (2%)
Strand = Plus / Plus
Query: 1 ctaagcacccgacactagacagggaagttcttgctctacagatctatagtgagaaacctg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 184 ctaagcacccgacactagacagggaagctcttgctctacagatctatagtgagaaacctg 243
Query: 61 gctgtgatcaaaggagagtgatagacagcctgaagatccaatgtgcagtggagagatgcc 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 gctgtgatcaaaggagagtgatagacagcctaaagatccaatgtgcagtggagagatgcc 303
Query: 121 ctgctctgttgtaatccatggtgcctggtctgtcacctctggtgacattgggaaagtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctgctctgttgtaatccatggtgcctggtctgtcacctctggtgacattgggaaagtcct 363
Query: 181 tatctaggagcttggcaactccatacagacccacactctcactccctcttgtcccaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatctaggagcttggcaactccatacagacccacactctcactccctcttgtcccaggtt 423
Query: 241 ggaggctcccaacctaatgtttcttcctctcagaggactgagcaatgggagcagtgtcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 424 ggaggctcccaacctaatgtttcttcctctcagaggactgagcaatgggagcagtctcca 483
Query: 301 ctgagagcagttgatctgagagaagggaagacacctgtacagtgaactagagctctgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctgagagcagttgatctgagagaagggaagacacctgtacagtgaactagagctctgctg 543
Query: 361 caggcagcagaggggctgcgtctgtgcacacagagtggtcctcgcactggctaggtgtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 544 taggcagcagaggggctgcgtctgtgcacacagagtggtcctcgcactggttaggtgtcc 603
Query: 421 tgaatgctgggttggagggagccttcttccccattcactagccagtgtcacacgcggact 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgagtgctgggttggagggagccttcttccccattcactagccagtgtcacacgcggact 663
Query: 481 cttcgcctccatgattctgaagaa-----------------gtaagagaaggctggggac 523
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 664 cttcgcctccatgattctgaagaacgtgtttatgttccaaagtaagagaaggctggggac 723
Query: 524 cgagcgggtttacctcctgttgtatgtgattgcctgtaagggggttccaagctgatttta 583
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 724 cgagcgggtttacctcctgttgtatgtgactgcctgtaagggagttccaagctgatttta 783
Query: 584 ttatggttaaaacagttgtcagttatatacacgctgacatgtacagtttggggaaat 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttatggttaaaacagttgtcagttatatacacgctgacatgtacagtttggggaaat 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_f19.g1 MSMg01no332_f19.g1 CHROMAT_FILE:
MSMg01no332_f19.g1 PHD_FILE: MSMg01no332_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:44 2005
(721 letters)
>mm_chr8_122817897_122819017
Length = 1121
Score = 1315 bits (680), Expect = 0.0
Identities = 713/728 (97%), Gaps = 7/728 (0%)
Strand = Plus / Minus
Query: 1 acactcatccctcactctttaggcctcggtttccccagtaagctccgcattatggtgtga 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 994 acactcatccctcactctttaggcctcagtttccccagtaagctccgcattatggtgtga 935
Query: 61 cacaca-------cctcagttggatcaggaagggatcatacagccccagggtgctaggta 113
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 cacacacccggggcctccgttggatcaggaagggatcatacagccccagggtgctaggta 875
Query: 114 gccaagagttccctcctcctacaaggaactcctggcataggtgggctgcgtctccctccc 173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gccaacagttccctcctcctacaaggaactcctggcataggtgggctgcgtctccctccc 815
Query: 174 caccgtagccacctacttcttccctcggagccagtgccacagcctggaatccttcattcc 233
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 cacagtagccacctacttcttccctcggagccagtgccacagcctggaatccttcattcc 755
Query: 234 caacagccagagttcacactataaaccctcccaacacagcaaagattaggcctccaaatg 293
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 754 caacagccagagttcacattataaaccctcccaacacagcaaagactaggcctccaaatg 695
Query: 294 ccacggccggggtgcagagactcagcccttcactgtcaccctgagactggctgacgcctc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ccacggccggggtgcagagactcagcccttcactgtcaccctgagactggctgacgcctc 635
Query: 354 ttggcttggcctcagtggctcctcacttatatgacatgaccctcaaggcctctgggattt 413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttggcttggccccagtggctcctcacttatatgacatgaccctcaaggcctctgggattt 575
Query: 414 ggtgaccctcagacacctgttttctgtgcttagctgtgtgctccaggcccaatacgagct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggtgaccctcagacacctgttttctgtgcttagctgtgtgctccaggcccaatacgagct 515
Query: 474 tatcttctgcagaaattcaggactctctatggattgtggtctttcagctctgtcctcatt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tatcttctgcagaaattcaggactctctatggattgtggtctttcagctctgtcctcatt 455
Query: 534 gcagaggaacttggcggtctagaacctgccatttacaggcccagtggggttcaggccctg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcagaggaacttggcggtctagaacctgccatttacaggcccagtggggttcaggccctg 395
Query: 594 gttgatctgaccttgctcgcctctgaccaacaagggtctgatggactggccctgagctgg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gttgatctgaccttgctcgcctctgaccaacaagggtctgatggactggccctgagctgg 335
Query: 654 cttgccactgcctgcttcctcagaggcctttacagactacctcacatcaacaagcctgcc 713
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttgccactgcctacttcctcagaggcctttacagactacctcacatcaacaagcctgcc 275
Query: 714 acaccaga 721
||||||||
Sbjct: 274 acaccaga 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
