BAC Information

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BAC

Clone NameMSMg01-332K07
Chromosome8 (Build37)
Map Location 36,213,552 - 36,370,465
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804
Downstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332K07.T7 (MSMg01no332_k07.b1)MSMg01-332K07.TJ (MSMg01no332_k07.g1)
ACCAG448620AG448621
length1,2221,282
length of high quality
(start - end)		654 (133 - 786)719 (89 - 807)
definitionCHROMAT_FILE: MSMg01no332_k07.b1 PHD_FILE: MSMg01no332_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:18 2005CHROMAT_FILE: MSMg01no332_k07.g1 PHD_FILE: MSMg01no332_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,369,812 - 36,370,465)(36,213,552 - 36,214,270)
sequence
NNCCAGCTCGATGGNNNCCAATGGGCGCTAAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTTCCTCACTTAAAAGCTCCCTACCTAGCTGAATCGNCA
NGAGNCACTTTCCCATCGCTCCGTTAAAGAANACGAGGCTGACTAACATA
TGAAGAAACATTTATTTACCTCATAGTTTTGGTGGCTGAGAACCCCAAAG
CATGGTCCAGTTAGGGTGTGTATCTCACACCTTAGGGTGGGTGGCAGCAA
GGCAGAAGTGAGAGCAAGAGAGCTAGGATGCTCACAAGGGAGGCAGGAGG
CACAGCGTGACCTTGCAGTCAGGCCCAGGCTTCTATTACAGTGAGCTCTA
GCAAAACTTCAGTCACCTCCTCATACAGATGCCATAACCCCTGTGCCGGT
AGCACCCCTCAAAACCAAAACTACTTCCAGGAGCTCATTCATTTGGAGGT
CCTACCACCTGCTAGTATTGTCATATAGGGGGCTAAGAACATGTCCGTTT
GGGGAATACGCTTAAACCACATCCAAACCATGGCAACACCCCATGTTCTC
TGCTTTTATTTCAATGCTACAAAGTTGTTGTTTTTTTAATTTTAAAAACC
TTTATTCTACTGGTTTATGATTTCCTATAGGAAATACATTGTGTGTTGAA
CCTATTACCCATACCCACCCCTTCTTCCCATTGGCTGTTTCAACACCCTT
CCTCTTAGNCCTCTCTATCCCCTAGATATGTCATACACACACACACACAC
ACACACACACACACACACACACACACACACAAATTTTACAGACTATCTCA
AATCTAGATAACACCAACAAGGGAAAATGCGGCTCTTTCTGATCCTAGCT
TAAGACATGGAGAAAGCCTACCCAGGGAGTTCCGCTTATCTCACCGCTAG
GGGGGGGATGCGGAAAAACATGAATTCAAGCCCCCCGGCTGGGGGGAAGA
CCCACCTCCGGCGGGGAAAAAAAAAAAAAAAAACAGGACCCACCCCCGGA
GTTCTTTTTTTTTTTTGGAATGGCCCAAAAACACTAGAAAATGATTCCCC
CTTCTGCGGGAACAAAATTTATAACCCGCACCCGGGGGGTTGCTTTTCTG
CGCCAAAAATTGAAGCCCGCCGTGTTTTGTCCGTAATTGAAAGTACCCTG
GGTTTAGAAGGGCCTTGTGGATTTTGCAAGCCGTTAGGGAGGATTCCAAA
AGGGAAATTGTGGGGGGAAAAA

CTCCCCCNNNNATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTCTATATCTGTGATAATGGTTTTA
TTCAGTTCATGACGTCACACTCTATCCTGGCCCAATGACCTTTAGTGTTA
AGATATTCTGCATCATTTGTCCCCTCTTTGTGCTTGGACTCAAGGCATCG
TGCAAACTGGGCGGTGCTTTCTAAATCCCTAAACTGCCTGACCAACTCAG
CCCTGCCTCTTAGTGCTTTTCTGGTGGGAATTGATTTAAGCCTGAATTTA
GAGGAGTTAAGGACTCAAGCAATAAGACCAATCCATTAAAAACAAACAAT
GAGGGCTTTATGAATAATTCATGTAATATATATCTGAGTATAACTATATT
GTATATTATAATGATTTGTGAATTAAACAATATGAAGAAGAAATGTTTAA
AGTTTAAGATGGTCATACATCCCGATGCATGCACATAGGTCAAAATAATT
TGTTCTTAATTGGCACGTGTTGTTTGAAACTTATCAGTGATATTTTCTAA
AGATTTATTTTTTATTTTATGGGTATGAGTGTTATGCATGTGGGCATGTG
TACCCTGTGTGTGCCTGGTACCTGTGAAGGCTGGAAGAGGACCTTGGGTA
TCTCAGACTTACAGGTGGTTATGACGTAATATTCTTGTTTTAATTTCACC
GAATAGGTTCAAAATGCACTAAAATTTTGCTCACAGGGATCTCACAAGAT
CTTACCCTGCATCCCGCTGCATTAATATTGGGCATCTCATTTTGAAAATT
ACAGATGGAGGTCAAAAGCTATTGGAAGAGCTATAAAATTATTTTTTAAT
TTTATTATTTTATTGTTATGTGAATGGGTGTTTTGTCTGCATCCCTGTCA
TGTACCATGTGCCTGTCTGGAATTTCTTGGAAGGAAAAAAAGGATGTTTG
TTTCCTCTGAAGAACATCCCGTGTTCCTAACCATGGAACCACTTCTAAAC
CCTCATAGTTCTTTATAATTTTAACATCCCTTATTTTTAAATAACCTACT
GTGGAAAATAATGGGTGCCCCCCCCCGAATTTAATTTTAAATCTTCTAGT
GTTTATTATTGTTAAATCTCCATTTTTTTCAGGAATTTTATACTTTTCAC
CGGCCCCTCTTCTCTTTAATGAAATCGCAAATCTCTTTCTTTAAATCCCT
TACCTCTATTTCTATATTCTTCTTTTAATTAACTCAATCATTATTATCTT
TCTACTCTACTTCATCGTTTGGCGTTCTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_k07.b1 MSMg01no332_k07.b1 CHROMAT_FILE:
MSMg01no332_k07.b1 PHD_FILE: MSMg01no332_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:18 2005
         (654 letters)



>mm_chr8_36369667_36370720
          Length = 1054

 Score = 1251 bits (647), Expect = 0.0
 Identities = 652/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgaggctgactaacatatgaagaaacatttatttacctcatagttttggtggctgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acgaggctgactaacatatgaagaaacatttatttacctcatagttttggtggctgagaa 740

                                                                       
Query: 61  ccccaaagcatggtccagttagggtgtgtatctcacaccttagggtgggtggcagcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccccaaagcatggtccagttagggtgtgtatctcacaccttagggtgggtggcagcaagg 680

                                                                       
Query: 121 cagaagtgagagcaagagagctaggatgctcacaagggaggcaggaggcacagcgtgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cagaagtgagagcaagagagctaggatgctcacaagggaggcaggaggcacagcgtgacc 620

                                                                       
Query: 181 ttgcagtcaggcccaggcttctattacagtgagctctagcaaaacttcagtcacctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgcagtcaggcccaggcttctattacagtgagctctagcaaaacttcagtcacctcctc 560

                                                                       
Query: 241 atacagatgccataacccctgtgccggtagcacccctcaaaaccaaaactacttccagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atacagatgccataacccctgtgccggtagcacccctcaaaaccaaaactacttccagga 500

                                                                       
Query: 301 gctcattcatttggaggtcctaccacctgctagtattgtcatatagggggctaagaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctcattcatttggaggtcctaccacctgctagtattgtcatatagggggctaagaacat 440

                                                                       
Query: 361 gtccgtttggggaatacgcttaaaccacatccaaaccatggcaacaccccatgttctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtccgtttggggaatacgcttaaaccacatccaaaccatggcaacaccccatgttctctg 380

                                                                       
Query: 421 cttttatttcaatgctacaaagttgttgtttttttaattttaaaaacctttattctactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttttatttcaatgctacaaagttgttgtttttttaattttaaaaacctttattctactg 320

                                                                       
Query: 481 gtttatgatttcctataggaaatacattgtgtgttgaacctattacccatacccacccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtttatgatttcctataggaaatacattgtgtgttgaacctattacccatacccacccct 260

                                                                       
Query: 541 tcttcccattggctgtttcaacacccttcctcttagncctctctatcccctagatatgtc 600
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259 tcttcccattgcctgtttcaacacccttcctcttagccctctctatcccctagatatgtc 200

                                                                 
Query: 601 atacacacacacacacacacacacacacacacacacacacacacacacaaattt 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atacacacacacacacacacacacacacacacacacacacacacacacaaattt 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_k07.g1 MSMg01no332_k07.g1 CHROMAT_FILE:
MSMg01no332_k07.g1 PHD_FILE: MSMg01no332_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:18 2005
         (719 letters)



>mm_chr8_36213352_36214470
          Length = 1119

 Score = 1367 bits (707), Expect = 0.0
 Identities = 716/719 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatggttttattcagttcatgacgtcacactctatcctggcccaatgacctttagtgt 60
           ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct: 201 ataatggttttattcagttcatgacgtcagagtctatcctggcctaatgacctttagtgt 260

                                                                       
Query: 61  taagatattctgcatcatttgtcccctctttgtgcttggactcaaggcatcgtgcaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagatattctgcatcatttgtcccctctttgtgcttggactcaaggcatcgtgcaaact 320

                                                                       
Query: 121 gggcggtgctttctaaatccctaaactgcctgaccaactcagccctgcctcttagtgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcggtgctttctaaatccctaaactgcctgaccaactcagccctgcctcttagtgctt 380

                                                                       
Query: 181 ttctggtgggaattgatttaagcctgaatttagaggagttaaggactcaagcaataagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctggtgggaattgatttaagcctgaatttagaggagttaaggactcaagcaataagac 440

                                                                       
Query: 241 caatccattaaaaacaaacaatgagggctttatgaataattcatgtaatatatatctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatccattaaaaacaaacaatgagggctttatgaataattcatgtaatatatatctgag 500

                                                                       
Query: 301 tataactatattgtatattataatgatttgtgaattaaacaatatgaagaagaaatgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataactatattgtatattataatgatttgtgaattaaacaatatgaagaagaaatgttt 560

                                                                       
Query: 361 aaagtttaagatggtcatacatcccgatgcatgcacataggtcaaaataatttgttctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagtttaagatggtcatacatcccgatgcatgcacataggtcaaaataatttgttctta 620

                                                                       
Query: 421 attggcacgtgttgtttgaaacttatcagtgatattttctaaagatttattttttatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attggcacgtgttgtttgaaacttatcagtgatattttctaaagatttattttttatttt 680

                                                                       
Query: 481 atgggtatgagtgttatgcatgtgggcatgtgtaccctgtgtgtgcctggtacctgtgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgggtatgagtgttatgcatgtgggcatgtgtaccctgtgtgtgcctggtacctgtgaa 740

                                                                       
Query: 541 ggctggaagaggaccttgggtatctcagacttacaggtggttatgacgtaatattcttgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctggaagaggaccttgggtatctcagacttacaggtggttatgacgtaatattcttgt 800

                                                                       
Query: 601 tttaatttcaccgaataggttcaaaatgcactaaaattttgctcacagggatctcacaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttaatttcaccgaataggttcaaaatgcactaaaattttgctcacagggatctcacaag 860

                                                                      
Query: 661 atcttaccctgcatcccgctgcattaatattgggcatctcattttgaaaattacagatg 719
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atcttaccctgcatcccgctgcattaatattgggcatctcattttgaaaattacagatg 919


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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