BAC Information

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BAC

Clone NameMSMg01-333G24
Chromosome8 (Build37)
Map Location 86,402,612 - 86,403,061
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97
Downstream geneEG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333G24.T7 (MSMg01no333_g24.b1)MSMg01-333G24.TJ (MSMg01no333_g24.g1)
ACCAG449193AG449194
length776725
length of high quality
(start - end)
---642 (84 - 725)
definitionCHROMAT_FILE: MSMg01no333_g24.b1 PHD_FILE: MSMg01no333_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:37 2005CHROMAT_FILE: MSMg01no333_g24.g1 PHD_FILE: MSMg01no333_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCCATTTAGCATCTCAACTGGCTGGCTTGCTGGGCTGGCCCAATGGGG
ATCCTCNNTCAAAAAGGCTCTTAATGATTCCCGTGCGGTAACACACAAAA
GTAAGGGAAGGCTAAGCTGGNCTGGGCTGGGCCTGCCTGGAANGGAAAAA
TGCTGCTTGTTTCTTGACNAAAAAATCCCTTTCCTCAACCAGGNNAGGAA
AATTCTCGTCCAAGCTGGCGGTCCCAGAATTCCTCGGAAGGGGGCCGGAA
AACCTTAATAGGGCAAAATTGAAGGGCCGGGGGAACTTTTTCCCGGGACA
ACGGGTCCCCTGGAATGGGCGCTTTTGGAAAACCCAAAAAAATAATGGTT
TTAAAAAACACCCGGGAAAAACAATTTTTAAAACCGCGGGGGTGTTTGAG
AAACACCGGGGGGAAAAACATAATTTTTATTTTGGGGGGGGAGAAAAAAA
AAAAAAAAAAAAGGGCCCCCCCCCCTTTGTGAGGAAAGAAAAAAAAAAAA
ATGTTGGGGGGGTTTTTGAAGAAAAAGGGGTTCAAAAAAAAAAATTTTTC
AAAAAAAAACCCGCCCCCCCCCNNGGGGGGGCCCCCCCNNNCCNCTCCGG
GGGGGGGGGGGGGGGGGGCCCCTCTTTTTTTTAATTTTTTTTTCCGGGGG
GGTTATGACAAAAAAAAAAAAAAACCCCCTCCCCTCCTCTCTCGGGGTTT
GAAAAGAAAGAATAAAAAAAAAAAAG
CAAAAAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCGGCT
CAAGGACTACTTAGGGCATTGGTGAAGGCCAGGAAGCAAAGTTCAATTTT
GCTTAGGTATTTGGCAAGTCATTGCTTGGAGGCACCTATAACAAAACAAT
ACTGAAAGGGAGCACACAGATTCATTCACAAGGACAAAATTGGAGCATAC
GTGCTATGGAATGCCACAGTTCCAGGAGACTAAGTTTCCGTGAAACTCTT
TGCCTCAGGACTGCATCCAGGCTTTTGGCCTGTCATGCATGTCACTACTG
GAGTGTGTGTGGCAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC
TCACAACCATCTGTAATGAGATCTAGACAGCCACAATGTACTCATATGCA
TAAATAAATCTTAAAAAAAAAGAGAGAGAGAGAAGAAGATCAGAACCTAG
AACCAGGTTAGCTCATCACCTGCTGCCCTTACCTGCCACCAGGAGTGGAC
AGCACATTAAAGAACTGACCCGCCACCCCAGCTCTCTCAGTTCCCATGTG
TTCCCAGCCAGTTTCTCCCCCTTTCTGTCCTTCTCTGTCCCCCCTCTTTT
CTGCCCTCATGGCTCTGCACACTCTGTCTGCCTCTGTCCCTTCTCCAGGC
CTTCACTTCCTTCCCCTTTTCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_g24.g1 MSMg01no333_g24.g1 CHROMAT_FILE:
MSMg01no333_g24.g1 PHD_FILE: MSMg01no333_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:37 2005
         (642 letters)



>mm_chr8_86402020_86403061
          Length = 1042

 Score =  862 bits (446), Expect = 0.0
 Identities = 449/450 (99%)
 Strand = Plus / Minus

                                                                        
Query: 191  aggagactaagtttccgtgaaactctttgcctcaggactgcatccaggcttttggcctgt 250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 aggagactaagtttccgtgaaactctttgcctcaggactgcatccaggcttttggcctgt 983

                                                                        
Query: 251  catgcatgtcactactggagtgtgtgtggcaggtcctgagttcaaatcccagcaaccaca 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  catgcatgtcactactggagtgtgtgtggcaggtcctgagttcaaatcccagcaaccaca 923

                                                                        
Query: 311  tggtggctcacaaccatctgtaatgagatctagacagccacaatgtactcatatgcataa 370
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 922  tggtggctcacaaccatctgtaatgagatctagacagctacaatgtactcatatgcataa 863

                                                                        
Query: 371  ataaatcttaaaaaaaaagagagagagagaagaagatcagaacctagaaccaggttagct 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  ataaatcttaaaaaaaaagagagagagagaagaagatcagaacctagaaccaggttagct 803

                                                                        
Query: 431  catcacctgctgcccttacctgccaccaggagtggacagcacattaaagaactgacccgc 490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  catcacctgctgcccttacctgccaccaggagtggacagcacattaaagaactgacccgc 743

                                                                        
Query: 491  caccccagctctctcagttcccatgtgttcccagccagtttctccccctttctgtccttc 550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  caccccagctctctcagttcccatgtgttcccagccagtttctccccctttctgtccttc 683

                                                                        
Query: 551  tctgtcccccctcttttctgccctcatggctctgcacactctgtctgcctctgtcccttc 610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  tctgtcccccctcttttctgccctcatggctctgcacactctgtctgcctctgtcccttc 623

                                          
Query: 611  tccaggccttcacttccttccccttttcaa 640
            ||||||||||||||||||||||||||||||
Sbjct: 622  tccaggccttcacttccttccccttttcaa 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)