BAC Information

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BAC

Clone NameMSMg01-333L08
Chromosome8 (Build37)
Map Location 111,137,793 - 111,138,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041744, LOC668038
Downstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L08.T7 (MSMg01no333_l08.b1)MSMg01-333L08.TJ (MSMg01no333_l08.g1)
ACCAG449389AG449390
length764752
length of high quality
(start - end)
154 (47 - 200)339 (74 - 412)
definitionCHROMAT_FILE: MSMg01no333_l08.b1 PHD_FILE: MSMg01no333_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:57 2005CHROMAT_FILE: MSMg01no333_l08.g1 PHD_FILE: MSMg01no333_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGGGCGNGGCTCGGCGGNATTCTAGAAGCCCTTACAGTCACTCGTAAGT
CTACACTAAAACAGTAAAATAAATAAAAATTAAAAAATTTTAACCCTTAC
TAACACAAACACACACATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACAAAGGAG
GTTTTANNGACACTTGCTGCTCTTATAGAGAACCTAAGTTTGAACTCCCA
NCCCCACCACTGGNCAGCTCATANCTGCCTATAATTCCAGCTCTATATTT
TTGAATGNNNNATACTTACNCCTTATTTAAAAATTAAAAATATTTCTTCC
ACCAAACACTTNTATTTTTTGTTGCTTGGGCTTTTTTTTTTTTGTCCCCC
CTTTTTTTTTTTCNNNCTNCTAGTTTATNAACTTTTTTTGGGGTTGGGCC
TGNNNNTTATNNTCTGATTCGTGTTNNNNNGGGGGGGGGGGCCTGNNNNN
NNNNNNNNTTNNNNNNNNTTTNNTNTGTTTTTCCACTTTTCCCCCTTTAA
ATTTTTTTTTTTTTTTNNNNTTCCNNAGACCCCTTTTTTTTTTNTTTCTC
CTCTTNNNNNNNNTNTCAAACTCACTTTTTTTTTGTTTTTTTTNTCTTGT
GTTNTGGTNNTTTTGGTNNTNCTNAANNANNNANANNNANNANNAAAATA
AAAAAAACGANAANNNAACTTCTCTTCATACAATTTTTNCTATTGGTGGG
GCGGGGGGGCTGTT
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCATTTTTCAGGACACGGGAGCAGTT
ATTTGGTACCCAGGATATACTAAAAATATCTTCAGTTGGACTTGATGGAA
GCTGTCTTTCAAGGAGAGATGGCTGCATTCAGCTGTCATACAGGATATTT
TCAGTAACTCGGGGCTTGGGGAGGCTGTGGTTCTAACCCTTCTCAGCTCG
CCACCCCACCCCTCTTCCCTGTTTGTATTCTTCACTCTCTCTGGCACAAT
GGAAATACCACATGTCATTGGGTGACCTCAGGCAAGGCCAGTGTTAGCAA
GTAGAGTGGAGCTTGTCTAGGTTGGACCCTATTCATGGGAATTTGGAGAA
TTTAGATGAGAGCTAGAGCCACCCCCTTTTCAGCTCCACATATAGAACTC
ACCACATGTTTTCTCAAAGTCTGTAGAGTAGAACTGAGCTGACTCTACTT
TGTGCACTTTAGTGGGAGGAAATCTGTGGTTTGATTGTATCTATTTCCTC
CATTCTTATATCCTTGCAGTACACACTAATCCTTTGCCAACACCCATTTG
TCACTAACCCATGCTGCCAGCTTCCTGTTTCCCTAAAATTTACGTTCCCA
AGGAATCCCCAGAATTTTCCTCAAAAGCATTTCTTTCCCATCTTTGACCC
CAGAAATAGATCTCAGCCTAGGAAAAGTCCTTTCCCCCCACATTCTTACC
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l08.g1 MSMg01no333_l08.g1 CHROMAT_FILE:
MSMg01no333_l08.g1 PHD_FILE: MSMg01no333_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:57 2005
         (339 letters)



>mm_chr8_111137593_111138331
          Length = 739

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatttttcaggacacgggagcagttatttggtacccaggatatactaaaaatatcttc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatttttcaggacacaggagcagttatttggtacccaggatatactaaaaatatcttc 260

                                                                       
Query: 61  agttggacttgatggaagctgtctttcaaggagagatggctgcattcagctgtcatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttggacttgatggaagctgtctttcaaggagagatggctgcattcagctgtcatacag 320

                                                                       
Query: 121 gatattttcagtaactcggggcttggggaggctgtggttctaacccttctcagctcgcca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattttcagtaactcagggcttggggaggctgtggttctaacccttctcagctcgcca 380

                                                                       
Query: 181 ccccacccctcttccctgtttgtattcttcactctctctggcacaatggaaataccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccacccctcttccctgtttgtattcttcactctctctggcacaatggaaataccacat 440

                                                                       
Query: 241 gtcattgggtgacctcaggcaaggccagtgttagcaagtagagtggagcttgtctaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcattgggtgacctcaggcaaggccagtgttagcaagtagagtggagcttgtctaggtt 500

                                                  
Query: 301 ggaccctattcatgggaatttggagaatttagatgagag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaccctattcatgggaatttggagaatttagatgagag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)