BAC Information

Click to search

BAC

Clone NameMSMg01-333L14
Chromosome8 (Build37)
Map Location 58,136,871 - 58,203,966
singlet/doubletdoublet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L14.T7 (MSMg01no333_l14.b1)MSMg01-333L14.TJ (MSMg01no333_l14.g1)
ACCAG449401AG449402
length715712
length of high quality
(start - end)		670 (46 - 715)629 (78 - 706)
definitionCHROMAT_FILE: MSMg01no333_l14.b1 PHD_FILE: MSMg01no333_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:58 2005CHROMAT_FILE: MSMg01no333_l14.g1 PHD_FILE: MSMg01no333_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,136,871 - 58,137,535)(58,203,338 - 58,203,966)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGG
AATTCAGTGTTATGTACGTTAGTAAGTCTATGCCCCTTAGACATACGCCT
TCTGTTTGCAATAATAAAAAATATAGTTAAGGTAAGATAAAGTAATAGAT
AAGGATAGTTTTATGAAGTTCAAGTTAGTATATTAGTTTCATTTTCTTAG
GAGTTTCTTGAGTTGTTTACAAAAACCAGCTCTAAATTCACCCTTAAGGA
ACATGAAGTGTTTATAAAGCAACTTGTAAAGTCAAATTGAACAGATTTGA
CTTTAGATTTATCTTCTGTTTCGGGGTGAGGGATATTCCTAAATTGTGAA
ATGATGAGAGGAAAGAAAAGAGTAATGGAGGCAGGGCAAATTAAGACAAA
GAAGAAACTATAGAGTGTGTTTTTCCCTATTAAATTTAAAAGACATTTCT
TTGCATGAAAATTACAGATTTGCACTGTCTCAACTAGTCATTTTCATTTT
ATTATCACAAAGAAGAACATCATTATTTAAGACTTAATAAATAGAACTAG
GTCTGTTGTTACTGAGACATAAGAACCTGCTCATTTAAACCACTGCAACT
TCAAACTGTTGAAGAATCTTAATTTGTACATTTTATTAAAAATAATCTTA
AATAACCTTTCAATCCTGTCTGAATCTCAGTGTTATAAGCTGTAGAANAT
AATTCTTCTATTTCN

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACACAGACAAAAGGGAATGGT
TATAACTACTGTGAAATATTGGAGCTGAATTAGGGTCAGCATATACAATG
TTCTGGCTAAGTGGGCATGCTTAGGGCCATTATAGTATCTGGAATATATT
AGTGTCAGGAAAAAAGACAAGGGAGACTGAGAAATGAAGAGCAAGGTGCC
GGGTGATGAAAGTGTTTAAACCTTTCAGGCAGTTTCATTTGAAGATTCAT
CAAGGGGAATGCTGAAAGGAAAAACTGAATGAGAATGTGTGGATTCCCTA
AGACAATCTTGTGTGAAGTATAAAAATGTGAAGTCCCTGTGGTGCACAGC
TGGTATATGTAGGAAAATTAGCATCTTAAAGATCTTGTCTTATATTTTTG
TGAAGACCCACTTTCCTACCAGCTTCTTGATGTAGGCAAGGCATCTCTTT
TGATGAATGGACACAATTTTATGTTACAGAGCAGGACCTAGAAGTAAGGG
CAGCCCTCTCTGAGGCTCTATGTTCTTTTTATTATGTGACACAAGCAATT
TGCTTCCTAACTCTTATCATTCTATGGGAAAGAGATGGCTCCCTTGCTTC
CAGTTCAATATCCACTGAAATTCTTACTGGAGCATTAAACGAGGAAACTC
CATGGGCGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l14.b1 MSMg01no333_l14.b1 CHROMAT_FILE:
MSMg01no333_l14.b1 PHD_FILE: MSMg01no333_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:58 2005
         (670 letters)



>mm_chr8_58136667_58137736
          Length = 1070

 Score = 1218 bits (630), Expect = 0.0
 Identities = 656/665 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgttatgtacgttagtaagtctatgccccttagacatacgccttctgtttgc 64
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcagtgttatgtaagttagtaagtctatgccccttagacatatgccttctgtttgc 264

                                                                       
Query: 65  aataataaaaaatatagttaaggtaagataaagtaatagataaggatagttttatgaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataataaaaaatatagttaaggtaagataaagtaatagataaggatagttttatgaagt 324

                                                                       
Query: 125 tcaagttagtatattagtttcattttcttaggagtttcttgagttgtttacaaaaaccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaagttagtatattagtttcattttcttaggagtttcttgagttgtttacaaaaaccag 384

                                                                       
Query: 185 ctctaaattcacccttaaggaacatgaagtgtttataaagcaacttgtaaagtcaaattg 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctaaattcaccctttaggaacatgaagtgtttataaagcaacttgtaaagtcaaattg 444

                                                                       
Query: 245 aacagatttgactttagatttatcttctgtttcggggtgagggatattcctaaattgtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacagatttgactttagatttatcttctgtttcggggtgagggatattcctaaattgtga 504

                                                                       
Query: 305 aatgatgagaggaaagaaaagagtaatggaggcagggcaaattaagacaaagaagaaact 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 aatgatgagaggaaagaaaagagtaatggaggcggggcaaattaagacaaagaagaaact 564

                                                                       
Query: 365 atagagtgtgtttttccctattaaatttaaaagacatttctttgcatgaaaattacagat 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 565 atagagtgtgtttttccctattaaatttaaaagatatttctttgcatgaaaattacagaa 624

                                                                       
Query: 425 ttgcactgtctcaactagtcattttcattttattatcacaaagaagaacatcattattta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgcactgtctcaactagtcattttcattttattatcacaaagaagaacatcattattta 684

                                                                       
Query: 485 agacttaataaatagaactaggtctgttgttactgagacataagaacctgctcatttaaa 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 agacttaataaatagaactaggtctgttgttactgagacataagaacctgttcatttaaa 744

                                                                       
Query: 545 ccactgcaacttcaaactgttgaagaatcttaatttgtacattttattaaaaataatctt 604
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccactgcaacttcaaactgttaaagaatcttaatttgtacattttattaaaaataatctt 804

                                                                       
Query: 605 aaataacctttcaatcctgtctgaatctcagtgttataagctgtagaanataattcttct 664
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 aaataacctttcaatcctgtctgaatctcagtgttataagctgtagaaaataattcttct 864

                
Query: 665 atttc 669
           |||||
Sbjct: 865 atttc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_l14.g1 MSMg01no333_l14.g1 CHROMAT_FILE:
MSMg01no333_l14.g1 PHD_FILE: MSMg01no333_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:58 2005
         (629 letters)



>mm_chr8_58203138_58204166
          Length = 1029

 Score = 1201 bits (621), Expect = 0.0
 Identities = 627/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacacagacaaaagggaatggttataactactgtgaaatattggagctgaattagggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttacacagacaaaagggaatggttataactactgtgaaatattggagctgaattagggtc 770

                                                                       
Query: 61  agcatatacaatgttctggctaagtgggcatgcttagggccattatagtatctggaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agcatatacaatgttctggctaagtgggcatgcttagggccattatagtatctggaatat 710

                                                                       
Query: 121 attagtgtcaggaaaaaagacaagggagactgagaaatgaagagcaaggtgccgggtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 attagtgtcaggaaaaaagacaagggagactgagaaatgaagagcaaggtgccgggtgat 650

                                                                       
Query: 181 gaaagtgtttaaacctttcaggcagtttcatttgaagattcatcaaggggaatgctgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaaagtgtttaaacctttcaggcagtttcatttgaagattcatcaaggggaatgctgaaa 590

                                                                       
Query: 241 ggaaaaactgaatgagaatgtgtggattccctaagacaatcttgtgtgaagtataaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggaaaaactgaatgagaatgtgtggattccctaagacaatcttgtgtgaagtataaaaat 530

                                                                       
Query: 301 gtgaagtccctgtggtgcacagctggtatatgtaggaaaattagcatcttaaagatcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtgaagtccctgtggtgcacagctggtatatgtaggaaaattagcatcttaaagatcttg 470

                                                                       
Query: 361 tcttatatttttgtgaagacccactttcctaccagcttcttgatgtaggcaaggcatctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcttatatttttgtgaagacccactttcctaccagcttcttgatgtaggcaaggcatctc 410

                                                                       
Query: 421 ttttgatgaatggacacaattttatgttacagagcaggacctagaagtaagggcagccct 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 ttttgatgaatggacacaattttacgttacagagcaggacctagaagtaagggcagccct 350

                                                                       
Query: 481 ctctgaggctctatgttctttttattatgtgacacaagcaatttgcttcctaactcttat 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctatgaggctctatgttctttttattatgtgacacaagcaatttgcttcctaactcttat 290

                                                                       
Query: 541 cattctatgggaaagagatggctcccttgcttccagttcaatatccactgaaattcttac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cattctatgggaaagagatggctcccttgcttccagttcaatatccactgaaattcttac 230

                                        
Query: 601 tggagcattaaacgaggaaactccatggg 629
           |||||||||||||||||||||||||||||
Sbjct: 229 tggagcattaaacgaggaaactccatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |