Query= MSMg01no333_n03.b1 MSMg01no333_n03.b1 CHROMAT_FILE:
MSMg01no333_n03.b1 PHD_FILE: MSMg01no333_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:05 2005
(683 letters)
>mm_chr8_35121724_35122806
Length = 1083
Score = 1280 bits (662), Expect = 0.0
Identities = 677/682 (99%), Gaps = 1/682 (0%)
Strand = Plus / Plus
Query: 3 ggaattctctctatagct-catctcttttcttatatcaggccttttcaggaggaggttgt 61
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctctctagagtttcatctcttttcttatatcaggccttttcaggaggaggttgt 261
Query: 62 aaaagacagaaaacaaacaaacaaaataacccagaattttgtgggaggggtcagggaaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaagacagaaaacaaacaaacaaaataacccagaattttgtgggaggggtcagggaaga 321
Query: 122 agaagactagaatatccattaccttgttgctctggatcttggggaaattctttgagctct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaagactagaatatccattaccttgttgctctggatcttggggaaattctttgagctct 381
Query: 182 tggaacttaaatatatctcaatcataaaaaggggtgaccatagcaattatgggttgtctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggaacttaaatatatctcaatcataaaaaggggtgaccatagcaattatgggttgtctt 441
Query: 242 aggtagggttttttgttttgttttgttttttgatgaacagacaccataaccaaggcaact 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggtagggttttttgttttgttttgttttttgatgaacagacaccataaccaaggcaact 501
Query: 302 cttataagggcaacttttaattggggctggcttaccagtccattatcatggtgggaacat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttataagggcaacttttaattggggctggcttaccagtccattatcatggtgggaacat 561
Query: 362 ggtagcatccacgcactcatggtgcaggcagagctgagagatcaacatcttcatctgaag 421
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtagcatccaggcagtcatggtgcaggcagagctgagagatcaacatcttcatctgaag 621
Query: 422 gcttcgagtggaagactgctcccaggcagctagaaccagggaattaaagcccacacccaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcttcgagtggaagactgctcccaggcagctagaaccagggaattaaagcccacacccaa 681
Query: 482 aagaccacatctactccaacaaggccacacccactccaacaagaccacaacccccaacag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagaccacatctactccaacaaggccacacccactccaacaagaccacaacccccaacag 741
Query: 542 tgccactccctgggccaagcatttacaaactatcacatgggtcaatacaagtggtaatgt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgccactccctgggccaagcatttacaaactatcacatgggtcaatacaagtggtaatgt 801
Query: 602 gttctgttgcacctggctcccagtaaatcagtctactgatattgatatccatgcccctgg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gttctgttgcacctggctcccagtaaatcagtctactgatattgatatccatgcccctgg 861
Query: 662 gtagtctcctctcacacagtcc 683
||||||||||||||||||||||
Sbjct: 862 gtagtctcctctcacacagtcc 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_n03.g1 MSMg01no333_n03.g1 CHROMAT_FILE:
MSMg01no333_n03.g1 PHD_FILE: MSMg01no333_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:05 2005
(310 letters)
>mm_chr8_35282196_35282905
Length = 710
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Minus
Query: 1 aacatgtccagcctggtcccttcaggagcttaattccctagatgatactagtaagcacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aacatgtccagcctggtcccttcaggagcttaattccctagatgatactagtaagcacta 342
Query: 61 aggcatagctgcagatacaccctgcctagacagcctgggcctagattaatattggaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aggcatagctgcagatacaccctgcctagacagcctgggcctagattaatattggaggat 282
Query: 121 gatgggaaacaaaattagaagggatcattaaacctacccaagcctaagaacacctggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gatgggaaacaaaattagaagggatcattaaacctacccaagcctaagaacacctggatt 222
Query: 181 ggttttggtagatgtaactttaatttttttcaagaccgatttttagttttattaaacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggttttggtagatgtaactttaatttttttcaagaccgatttttagttttattaaacact 162
Query: 241 ttttagcccatcactcaccacaggtagcaagaaagattggatatggtgtggggggagtgg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttttagcccaccactcaccacaggtagcaagaaagattggatatggtgtggggggagtgg 102
Query: 301 acctgtttag 310
||||||||||
Sbjct: 101 acctgtttag 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
