BAC Information

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BAC

Clone NameMSMg01-333P04
Chromosome8 (Build37)
Map Location 102,626,742 - 102,627,231
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054
Downstream geneLOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333P04.T7 (MSMg01no333_p04.b1)MSMg01-333P04.TJ (MSMg01no333_p04.g1)
ACCAG449568AG449569
length746740
length of high quality
(start - end)
567 (69 - 635)51 (362 - 412)
definitionCHROMAT_FILE: MSMg01no333_p04.b1 PHD_FILE: MSMg01no333_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:14 2005CHROMAT_FILE: MSMg01no333_p04.g1 PHD_FILE: MSMg01no333_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGA
ATTCAGGACTGTTATCTCACACAAGAAAGAAATGTAGAGGCAGATGCTAA
TGCAGAGGCCACGGAGGGATGCCGCGTACTGGATTGCTTCCCCTGCCTTG
TTCAACTTGCCTTCTTCTATAAGGTAGGACCATCAGGACAGGAATTGTGC
CACTCACAATGGGCCCCCCACCACTGATCTAATAACTGAAAAAAATTTCC
TCAGCTGGATCTCCTGTAGACAGTTCCTCAATGGGGACTCCTTTCTCCAT
GATAACTCCAGCTTGTGTCAAGTTGATATACAAAATTAGTCAGTATGCCT
ACCGAGCATTTCCTCAAGACTAGTATGTGTAAGAGGGATTTTACTGGCAT
TATCTACCTAACTTCCATGTGAGCTTTGCACACATAAACTAATTGACACT
AGAGAATTTACCTGTAAACATTACACTTTTCACCGGGTCTTCTGAAGGAT
ACTAAAGGAAAGTGTGCCTGCCTTCCTGCTCCAGAATATACAGTGCTTCC
CTACTTTTCAGTGTTGGCCTCAGACAACATGAAACGCTGAGTTGGCTCCA
TTTTACTTTCCAAGTACTGCTTACTTCACAGACTCACCCCAACACAATAC
TTATAGTAAAGTACAATTATGTGATACATCCTTATTTACCCATTAAACAT
CGGGGCACATGAAAAAANCCCTTCCCATGTTGTTTTGCTTGCGTCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGAAATTGGATAGCCATTTATATTTCAGA
GTGTGCTGTTATTGGTTCCTGTTAGATTATGCCCTGGTTCTCCCCTCTTA
AAGTATTGAACTTGATTTTTGCATTTTGCAGGAGCCCACAGCTGAGAGAC
TTTAGTCTTATTTAAAATGAATTTTTAGATAGATTACACGTCCAGAAATA
CTTTAAATTCTGGGTATTTGAGTTCTGGACTAATGCTGGACATATAGAAT
TTACAACACCTTGTATAGTGATGTTGACATTAATGTGAGACCTTGGGCAT
TAGCAAGAAAGGAATGGTTGTGGCTTAACATTGATGTTTTGTATATCAAG
TTGCTAAGAGTCGTCCACCCCAGTTACTTTTATGTCAACTTGATGCAAGA
TGTAGTCTTCTGAGAGGGGGGAAGCTCAACTGAGAAATTGTCTCCAGAAG
ATCAGGAGGTAGGTAAGCTTGCTGGGTGTTTTAATTAGTGATAGTTGTGT
GAGGATCTGCCCATTTTGGCGAGTGCCACCCTCTGGTGGGAAGCTCTTGA
ATCTATACGAATAGAAAACGATCTAATTATGAGAAGCAAGCTTCTAAAAC
GGAACTCCTCCATGCCTTCTACTTTCGGTTTCTGCCCCCCGGTTTGCAGC
CTCCGGTTTGATTTCCTTCTTTTGGGCTTCCTCCTGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_p04.b1 MSMg01no333_p04.b1 CHROMAT_FILE:
MSMg01no333_p04.b1 PHD_FILE: MSMg01no333_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:14 2005
         (567 letters)



>mm_chr8_102626265_102627231
          Length = 967

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 78  ccttgttcaacttgccttcttctataaggtaggaccatcaggacaggaattgtgccactc 137
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 967 ccttgttcaacttgccttcttctagaaggcaggaccatcaggacaggaattgtgccactc 908

                                                                       
Query: 138 acaatgggccccccaccactgatctaataactgaaaaaaatttcctcagctggatctcct 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 acaatgggccccccaccactgatctaataactgaaaaaaatttcctcagctggatctcct 848

                                                                       
Query: 198 gtagacagttcctcaatggggactcctttctccatgataactccagcttgtgtcaagttg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gtagacagttcctcaatggggactcctttctccatgataactccagcttgtgtcaagttg 788

                                                                       
Query: 258 atatacaaaattagtcagtatgcctaccgagcatttcctcaagactagtatgtgtaagag 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atatacaaaattagtcagtatgcctaccgagcatttcctcaagactagtatgtgtaagag 728

                                                                       
Query: 318 ggattttactggcattatctacctaacttccatgtgagctttgcacacataaactaattg 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggattttactggcattatctacctaacttccatgtgagctttgcacacataaactaattg 668

                                                                       
Query: 378 acactagagaatttacctgtaaacattacacttttcaccgggtcttctgaaggatactaa 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 acactagagaatttacctgtaaacattacacttttcaccgggtcttctgaaggatactaa 608

                                                                       
Query: 438 aggaaagtgtgcctgccttcctgctccagaatatacagtgcttccctacttttcagtgtt 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aggaaagtgtgcctgccttcctgctccagaatatacagtgcttccctacttttcagtgtt 548

                                                                       
Query: 498 ggcctcagacaacatgaaacgctgagttggctccattttactttccaagtactgcttact 557
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggcctcagacaacatgaaaaactgagttggctccattttactttccaagtactgcttact 488

                     
Query: 558 tcacagactc 567
           ||||||||||
Sbjct: 487 tcacagactc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)