Query= MSMg01no334_d22.b1 MSMg01no334_d22.b1 CHROMAT_FILE:
MSMg01no334_d22.b1 PHD_FILE: MSMg01no334_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:36 2005
(633 letters)
>mm_chr8_100115751_100116783
Length = 1033
Score = 561 bits (290), Expect = e-164
Identities = 308/314 (98%)
Strand = Plus / Minus
Query: 320 tttctcctccttctccctcccttccgctccaccttcccttttatctgcccaatcatcagc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 tttctcctccttctccctcccttccgctccaccttcccttttatctgcccaatcatcagc 974
Query: 380 tttcctttattttacaaattaatgtgggaagcaggtttacaggaaatcacctgagtgcta 439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tctcctttattttacaaattaatgtgggaagcaggtttacaggaaatcacctgagtgcgg 914
Query: 440 actcattccttgttcacaaccccacagaagagaacagatttaacatcaaatataattagc 499
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 913 actcattccttgttcacaaccccacagaagagaacaggtttaacatcaaatataatttgc 854
Query: 500 cccagggctatccacaacactaggccagctcttcctttaggttcaatgaaaaattcactc 559
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 cccagggctatccacaacaataggccagctcttcctttaggttcaatgaaaaattcactc 794
Query: 560 atatatactctacgaataaatctgacattcctgggattttccactttgcatatttaacct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atatatactctacgaataaatctgacattcctgggattttccactttgcatatttaacct 734
Query: 620 aaattggacagtat 633
||||||||||||||
Sbjct: 733 aaattggacagtat 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_d22.g1 MSMg01no334_d22.g1 CHROMAT_FILE:
MSMg01no334_d22.g1 PHD_FILE: MSMg01no334_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:36 2005
(589 letters)
>mm_chr8_99988872_99989860
Length = 989
Score = 1081 bits (559), Expect = 0.0
Identities = 581/595 (97%), Gaps = 12/595 (2%)
Strand = Plus / Plus
Query: 1 tgccatctttttatgacaattaattaaatcgtcatcctttagctattattataagaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccatctttttatgacaattaattaaatcgtcatcctttagctattattataagaatgt 260
Query: 61 attttggatcttttacatatcagtattccagagtcatagaagctgctgtttttatcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttggatcttttacatatcagtattccagagtcatagaagctgctgtttttatcatct 320
Query: 121 tgtgttttctgtttatctctgaattactgtggtcctcaagtttccctagcatcaaataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgttttctgtttatctctgaattactgtggtcctcaagtttccctagcatcaaataat 380
Query: 181 cactatgaaatataaaatgaatcgacttacttggatctgaatggtaaatttaaagcaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactatgaaatataaaatgaatcgacttacttggatctgaatggtaaatttaaagcaagc 440
Query: 241 ttctagga------tttttttatttcaccaaggacatcaaacacacatttttcttgcaat 294
|||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaggaacacgat------atttcaccaaggacatcaaacacacatttttcttgcaat 494
Query: 295 tctcagcatagaatatgagagctaagaggataaatgctgctcaaagtgttgttctagtca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctcagcatagaatatgagagctaagaggataaatgctgctcaaagtgttgttctagtca 554
Query: 355 ggcattaaagaaagaaaaggttaacaattttcttactgttggctccaaaactatcacaga 414
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggtattaaagaaagaaaaggttaacaattttcttactgttggctccaaaactatcacaga 614
Query: 415 attttctatcctttcttgtcatctcttttggtatatcatgggataaatcacttggacatg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 attttctatcctttcttgtcatctcttttggtatatcatgggataaatcacttggacatg 674
Query: 475 aatggattacaaattacacatatattggcctactccatggtaacaatttatgatgactat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aatggattacaaattacacatatattggcctactccatggtaacaatttatgatgactat 734
Query: 535 gattctttaagaaacaatctacttaaggaggcaggatttctttgctctgcaaagt 589
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 735 gattctttaagaaacaatctacttaaggaggcaggatttctttgttctgcaaagt 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
