Query= MSMg01no334_f11.b1 MSMg01no334_f11.b1 CHROMAT_FILE:
MSMg01no334_f11.b1 PHD_FILE: MSMg01no334_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:44 2005
(505 letters)
>mm_chr8_42919492_42920396
Length = 905
Score = 932 bits (482), Expect = 0.0
Identities = 498/506 (98%), Gaps = 5/506 (0%)
Strand = Plus / Plus
Query: 5 gaattccttggcttatccataaaaggacgtgacatcctcctccacaggtgttttctcagc 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattccttggcatatgcataaaaggacgtgacatcctcctccacaggtgttttctcagc 259
Query: 65 catgtcctttgctactctattcaaaatagccaggaaatgaaaacaacctaaataaccta- 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catgtcctttgctactctattcaaaatagccaggaaatgaaaacaacctaaataacctaa 319
Query: 124 ----ccactgaccaacgtgcatatacctacatacactatggaatcctactgaacgatgga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctaccactgaccaacgtgcatatacctacatacactatggaatcctactgaacgatgga 379
Query: 180 atcatcaactgtgcagattaataagtggacttagaaaatgtcataccgagttcatgataa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcatcaactgtgcagattaataagtggacttagaaaatgtcataccgagttcatgataa 439
Query: 240 tcagagaaacaatgagtctgggagtcatgggtggtgtgtctgtgtctcagcaaaatggta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcagagaaacaatgagtctgggagtcatgggtggtgtgtctgtgtctcagcaaaatggta 499
Query: 300 gatacatagtgacatcagtcttaactggcacttctcataaagacaggtaacaatgattct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatacatagtgacatcagtcttaactggcacttctcataaagacaggtaacaatgattct 559
Query: 360 gactgctgacaaaatggtaacttaagttctcagttttgaatcatagctgtaattaaactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gactgctgacaaaatggtaacttaagttctcagttttgaatcatagctgtaattaaactg 619
Query: 420 tcctaaacactaatttcaacagtaacaggaacagcacttaagttaatattccccttaaag 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctaaacactaatttcaacagtaacaggaacagcacttaagttaatattccccttaaag 679
Query: 480 ccatctttctttgcttttatatctga 505
||||||||||||||||||||||||||
Sbjct: 680 ccatctttctttgcttttatatctga 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_f11.g1 MSMg01no334_f11.g1 CHROMAT_FILE:
MSMg01no334_f11.g1 PHD_FILE: MSMg01no334_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:44 2005
(244 letters)
>mm_chr8_43129676_43130319
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 ctttagctataaagcacgttgagcacgttgaaaacccacagacgtgattagacttggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctttagctataaagcacgttgagcacgttgaaaacccacagacgtgattagacttggtgg 385
Query: 61 tcttgtgtgttttatcaaccagtgacatcatgacagatgagaatgttctgccaaggaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttgtgtgttttatcaaccagtgacatcatgacagatgagaatgttctgccaaggaaag 325
Query: 121 tcaaaatttcctaacattaatgtatccacagacaaatcacatgtactaaatgtcatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaaaatttcctaacattaatgtatccacagacaaatcacatgtactaaatgtcatttaa 265
Query: 181 cccatacaatgatttgaatgtaatccagactcaaagcaggaaaagcaactttactactgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccatacaatgatttgaatgtaatccagactcaaagcaggaaaagcaactttactactgc 205
Query: 241 caga 244
||||
Sbjct: 204 caga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
