BAC Information

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BAC

Clone NameMSMg01-335C17
Chromosome8 (Build37)
Map Location 104,724,126 - 104,724,432
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335C17.T7 (MSMg01no335_c17.b1)MSMg01-335C17.TJ (MSMg01no335_c17.g1)
ACCAG450488AG450489
length730761
length of high quality
(start - end)
307 (315 - 621)438 (72 - 509)
definitionCHROMAT_FILE: MSMg01no335_c17.b1 PHD_FILE: MSMg01no335_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:50 2005CHROMAT_FILE: MSMg01no335_c17.g1 PHD_FILE: MSMg01no335_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATAGGTTGCCGATCCGCGGAATTCATCTTAAGTG
TTCCTTGCTTATATCTTCATTTCTAGCACTTTCCTTCAAGGATATCATAC
AATTTACCTTATGTCTGATCAAAGAAAGGCTTTAGACATTTCTCANAATC
TGTCTTCATTGTAGAATATGTTGAATGCAACATCAGAACAGACATTTGTT
CTATAGCAACCACATGCATCCATCTCCAAAATTATTTTCATTTAATTTAT
TTTTATCTCTTCTTTATTGTAGGTTCTGTACCAAATGATAAACTTCCATA
GTCCTATGTTATCACATATTTAAATAAAAATATGTTTAGGGGTGAAATAA
TGTTAGTATAAACTGTTACTTCTTTATAATTTAATTACCATTGTACATTA
GAGTTTAAATTCATTCCTCAAAGCATTGTATGTTTGCTTACTTGGGAAGG
ATAATCTTTGAACTTCATAAAGCTAGAGCATTCAGTTAATCACCTATGCA
CTTATTACACTCACCCTCCAAACAGTAACATAACAGCAGTATGTAGGTAT
AGAATATGGAAACATAAATTCATGTTCCTTATAAGTACACTTATTCATGA
AAACAATTCATAATCATATGTTAATTAATACTGCAATAGAATTATATTAA
CCATAGCATGAAAGGTAAATGGCAAGGGGAATGAGTGACACATGTTAAGC
TCTAATAGTAGTTAAGTGATTGCACAAATG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTTTGTACCTCATTTTANAA
TTGGCATATTTGGTTTGTTGGTGTCTAAATTCTTGAGTTCCTTATATATT
TTGGATATTCTCTCTCTGTCAGATGCAGGGTTCGTAAAGATATCTTCCCA
ATCTGTACGCTATATTTTGTTCTATTAATGGTGGAGTTTGACTTGCAGCA
GTTTTTCAGTTTCTTGATGTTCTATTTATTAATTGCTAATGTTTGTGCCT
GAGCCACTGGTGTTCTGTTCTTTAAGTTGTCTCCTGTTCCAGTGAGTTCA
AGGTTATGCTCCATTTTCTTGTTTGTTAGCTTTAGTGTATCTGGCTTTAT
TTTGAGGTCTGTCATCCACTTGGACATGAGTTTTGTGCATGGTGATAAAT
ATGGATCTATTTTTATTCTTTTACATGCTGACATTCAGTTTGACAAGCAA
CACCTTTGAAGATGCTATCCCTTTTCATTGTCTAGTTGTGGCTTCTTTGT
CAAAACTCAAGTGTCCTTGTGCGTGTGGGTTTATTTCTTATTCTGCGATT
CATTTCCCTTGATTACTTTGTCTGTCCCCTATTACATTACCGTGTTGCTC
TTCCCTACTATTGTTCCCGTATTATTTGCCTGAGCCCTGGTTATTATCCT
ACCCTTTCTCAGGTCCTTTTTACGTCTCCATGCCTTTTTTTATTCTATTC
TCGGTGTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_c17.b1 MSMg01no335_c17.b1 CHROMAT_FILE:
MSMg01no335_c17.b1 PHD_FILE: MSMg01no335_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:50 2005
         (307 letters)



>mm_chr8_104723926_104724632
          Length = 707

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatttaaataaaaatatgtttaggggtgaaataatgttagtataaactgttacttctt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatttcaataaaaatatgtttaggggtgaaataatgttagtataaactgttacttctt 260

                                                                       
Query: 61  tataatttaattaccattgtacattagagtttaaattcattcctcaaagcattgtatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataatttaattaccattgtacattagagtttaaattcattcctcaaagcattgtatgtt 320

                                                                       
Query: 121 tgcttacttgggaaggataatctttgaacttcataaagctagagcattcagttaatcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttacttgggaaggataatctttgaacttcataaagctagagcattcagttaatcacc 380

                                                                       
Query: 181 tatgcacttattacactcaccctccaaacagtaacataacagcagtatgtaggtatagaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tatgcacttattacactcaccctccaaacaggaacataacagcagtatgtaggtatagaa 440

                                                                       
Query: 241 tatggaaacataaattcatgttccttataagtacacttattcatgaaaacaattcataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatggaaacataaattcatgttccttataagtacacttattcatgaaaacaattcataat 500

                  
Query: 301 catatgt 307
           |||||||
Sbjct: 501 catatgt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)