Query= MSMg01no335_h14.b1 MSMg01no335_h14.b1 CHROMAT_FILE:
MSMg01no335_h14.b1 PHD_FILE: MSMg01no335_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:15 2005
(473 letters)
>mm_chr8_77372287_77373158
Length = 872
Score = 870 bits (450), Expect = 0.0
Identities = 465/470 (98%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 4 aattaaaaaccaatttgaaacactgagcatcctctagctaaggtcaagagctcatggcag 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 aattaaaaaccaatttgaaacactgagcaacctctagctaaggtcaagagctcatggcag 263
Query: 64 catctttgccctgtggtgccatctgtgcctgcatcctattttcagaacctgcaaggcccc 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catctttgccctgcggtgccatctgtgcctgcatcctattttcagaacctgcaaggcccc 323
Query: 124 tgaaacctccaaggttcaagattctgtcctctgtggaagatatttccacaactctctaga 183
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tgaaacctcccaggttcaagattctgtcctctgttgaagatatttccacaactctctaga 383
Query: 184 tctagctttgtaatctgtaaaacaggtttctcacattttattgaatttcacacagaaact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctagctttgtaatctgtaaaacaggtttctcacattttattgaatttcacacagaaact 443
Query: 244 agcaacctgcagcccaaaggcctgtttttacacacagcctacaagttaagaatattcttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcaacctgcagcccaaaggcctgtttttacacacagcctacaagttaagaatattcttc 503
Query: 304 cacatttttaagttgtcaaaaaaaataaaaagaagaagaatatttcatggcacatgaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacatttttaagttgtcaaaaaaaataaaaagaagaagaatatttcatggcacatgaaaa 563
Query: 364 ttatgaaatagaaattccacaaataaaatttggtaggaatgttgccaaactcctttaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatgaaatagaaattccacaaataaaatttggtaggaatgttgccaaactcctttaagc 623
Query: 424 atcgccaatggttctttgaggtttggagcagaattaaatggctgaaacag 473
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcgc-aatggttctttgaggtttggagcagaattaaatggctgaaacag 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_h14.g1 MSMg01no335_h14.g1 CHROMAT_FILE:
MSMg01no335_h14.g1 PHD_FILE: MSMg01no335_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:15 2005
(517 letters)
>mm_chr8_77519812_77520728
Length = 917
Score = 992 bits (513), Expect = 0.0
Identities = 516/517 (99%)
Strand = Plus / Minus
Query: 1 agggctagagagaatctctcaaacaaaacaatggcaatattctcactagttcaaaaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 agggctagagagaatctctcaaacaaaacaatggcaatattctcactagttcaaaaatga 658
Query: 61 tgagtttattagaaagccatacaggtgatcttggctttcacaagctgacactaagtaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgagtttattagaaagccatacaggtgatcttggctttcacaagctgacactaagtaaaa 598
Query: 121 taactttagattgaagtttcaggcttttcgtacctgatgaattttggcatagaattcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taactttagattgaagtttcaggcttttcgtacctgatgaattttggcatagaattcctg 538
Query: 181 agaaataatgccccgctcctccccagtccaaccacatccttatttagtctcataatacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agaaataatgccccgctcctccccagtccaaccacatccttatttagtctcataatacat 478
Query: 241 ccatcattcactggtcaaacaccaatacacttttaaacataagtaatggcaggccagaga 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccatcagtcactggtcaaacaccaatacacttttaaacataagtaatggcaggccagaga 418
Query: 301 ctcataaacagctttcccccttgagaacattacaagtaatataagatacaattaggcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctcataaacagctttcccccttgagaacattacaagtaatataagatacaattaggcaat 358
Query: 361 gtcttattgggttggaagccagctgaactttttactaggtgtgaaaagttatttcttgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtcttattgggttggaagccagctgaactttttactaggtgtgaaaagttatttcttgac 298
Query: 421 tgctgtgaaaaattagtacattttaaaaaggtttggaaacataaaattagggaatgctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgctgtgaaaaattagtacattttaaaaaggtttggaaacataaaattagggaatgctcc 238
Query: 481 tgaaggcaggtcaacacagacgtgctggctttctgta 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgaaggcaggtcaacacagacgtgctggctttctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
