BAC Information

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BAC

Clone NameMSMg01-335M13
Chromosome8 (Build37)
Map Location 88,186,804 - 88,359,116
singlet/doubletdoublet
Overlap geneNeto2, Itfg1, LOC100040798
Upstream geneLOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
Downstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335M13.T7 (MSMg01no335_m13.b1)MSMg01-335M13.TJ (MSMg01no335_m13.g1)
ACCAG450959AG450960
length721739
length of high quality
(start - end)		192 (112 - 303)499 (133 - 631)
definitionCHROMAT_FILE: MSMg01no335_m13.b1 PHD_FILE: MSMg01no335_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:39 2005CHROMAT_FILE: MSMg01no335_m13.g1 PHD_FILE: MSMg01no335_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,358,925 - 88,359,116)(88,186,804 - 88,187,297)
sequence
GGCGCTATACGACTCCTATAGTTCCAGGAACCGCGGAATTCTCTCAATGT
CTCTCATTAAATGAAGCTTTTGATGTCTCCTTAGTGATAGCTATTGCAGG
AAATTAGACATGAATCTTGTAAAAAATAAAAGAGTACTTGGAGAAGAAGA
AAATAATATTAAATGCCCAACACTTCATATTGTGTTTCTCTGTGTGAGTA
TGTCTACACACACACACATATACACATATATCCTTTTTTTTTTTTCACAG
ATCCTAAAAACATGACCATACTCAATAGGACTTTTCATGACCAACCACTG
ATTATGTTTTAAGTATGTGCTTGCTTTACTTTTACAATTTAAAACTTACA
AATGTAAAATAAAATCTTTTATCCAGAAAGCTACTTTGATAAGTAGGATT
GACACTAAATTCACTCCTTAAGATTATAGGAACCTGAGGGGAGGCCCTTG
TTTCTGTGAAGACTTGATGCCCCAGTATAGGTAAAGGAATGCTAAGGCGG
GAAGGCAGGAGTGGGTGGGTGGGTGGAGGAACACCCTCATAGAAGCAAGG
TAAGGGGGGATGGAATAGGGGGTTTGCATAACGTAAACCTGTAAAGGCTA
AAATCATTTGATATGTAACAAAACCAAATATCTTTTTTATTAAAATCCTC
GGTCTCTATGGCCTTCAACAAAATAAATTTTTTTGATTTTTATCCCTTCA
TTACTTATTAGTCCTCCTCTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCCCCACAAGGAAAAAGTCAACGCCATGA
AGTTGTCCTATGACTCTCACAGGTGTGCTGTGTGCCTTTGTGCATTCACA
CACTTAAAAATTTAAAAAGAAACCTTTAATATATATATATACATATATGT
ATACACACACATACATATAATATTTTAAATTATTTCAATCTCATTTTATT
TAACTACAAAAACACTATAATCTTCATAGGTGCCCAATACAGTAAAGGAA
ACAAAAGAACTTAAAGAGTCACAAATATTTACATGAATCAAACAATACAT
TATAGAAATCACACCTTTTAATGTTCTTCTCTGAAGTGAGTCAATATACA
ACGACAGTACCTTAGCTTTTGGAGTAGCTTTAATTGTCCATATGCAATCA
ACTGCTTGGCCAGGCTTTGTTTTCTCTTCTTGCTCTACTTGGCTAGACCG
TACTATTCCATCAGCTCCAGAGAGCTCAAACTGGCAATCTGGGGGGGGAA
AAAAAGATATTCAAAGAAAAATAAAACTAACAAAAAATGTCACACAAAGA
AAGAGGTAATATACTAAACCTGGAATGGGATTTAAAATACCTCCAAGGTA
AGTAAAGTCTGGATCTGTAACAAAAGAGAGGAGAAAGTCATTGGTACTGA
GCTTTTCAGATCTAACTTACTGTGTAAAGCACCATTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_m13.b1 MSMg01no335_m13.b1 CHROMAT_FILE:
MSMg01no335_m13.b1 PHD_FILE: MSMg01no335_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:39 2005
         (192 letters)



>mm_chr8_88358725_88359316
          Length = 592

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%), Gaps = 2/193 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatcttgtaaaaaataaaagagtacttggagaagaag-aaaataatattaaatgcccaa 59
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 392 gaatcttgtaaaaaataaaagagtacttggagaagaagaaaaataatattaaatgcccaa 333

                                                                       
Query: 60  cacttcatattgtgtttctctgtgtgagtatgtctacacacacacacatatacacatata 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cacttcatattgtgtttctctgtgtgagtatgtctacacacacacacatatacacatata 273

                                                                       
Query: 120 tccttttttttttttcacagatcctaaaaacatgaccatactcaataggacttttcatga 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcc-tttttttttttcacagatcctaaaaacatgaccatactcaataggacttttcatga 214

                        
Query: 180 ccaaccactgatt 192
           |||||||||||||
Sbjct: 213 ccaaccactgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no335_m13.g1 MSMg01no335_m13.g1 CHROMAT_FILE:
MSMg01no335_m13.g1 PHD_FILE: MSMg01no335_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:39 2005
         (499 letters)



>mm_chr8_88186600_88187497
          Length = 898

 Score =  934 bits (483), Expect = 0.0
 Identities = 494/499 (98%), Gaps = 5/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctttgtgcattcacacacttaaaaatttaaaaagaaacctttaatatatatatatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 205 tgcctttgtgcattcacacacttaaaaatttaaaaagaaaccttta--atatatatatac 262

                                                                       
Query: 61  atatatgtatacacacacatacatataatattttaaattatttcaatctcattttattta 120
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatatgtat--acacacatacatataatattttaaattatttcaatctcattttattta 320

                                                                       
Query: 121 actacaaaaacactataatcttcataggtgcccaatacagtaaaggaaacaaaagaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actacaaaaacactataatcttcataggtgcccaatacagtaaaggaaacaaaagaactt 380

                                                                       
Query: 181 aaagagtcacaaatatttacatgaatcaaacaatacattatagaaatcacaccttttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagagtcacaaatatttacatgaatcaaacaatacattatagaaatcacaccttttaat 440

                                                                       
Query: 241 gttcttctctgaagtgagtcaatatacaacgacagtaccttagcttttggagtagcttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcttctctgaagtgagtcaatatacaacgacagtaccttagcttttggagtagcttta 500

                                                                       
Query: 301 attgtccatatgcaatcaactgcttggccaggctttgttttctcttcttgctctacttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtccatatgcaatcaactgcttggccaggctttgttttctcttcttgctctacttgg 560

                                                                       
Query: 361 ctagaccgtactattccatcagctccagagagctcaaactggcaatctggggggggaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagaccgtactattccatcagctccagagagctcaaactggcaatctggggggggaaaa 620

                                                                       
Query: 421 aaagatattcaaagaaaaataaaactaacaaaaaatgtcacacaaagaaagaggtaatat 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aa-gatattcaaagaaaaataaaactaacaaaaaatgtcacacaaagaaagaggtaatat 679

                              
Query: 481 actaaacctggaatgggat 499
           |||||||||||||||||||
Sbjct: 680 actaaacctggaatgggat 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space:   434232
Effective search space used:   434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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