Query= MSMg01no335_m22.b1 MSMg01no335_m22.b1 CHROMAT_FILE:
MSMg01no335_m22.b1 PHD_FILE: MSMg01no335_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:41 2005
(569 letters)
>mm_chr8_19325329_19326297
Length = 969
Score = 615 bits (318), Expect = e-180
Identities = 351/362 (96%), Gaps = 4/362 (1%)
Strand = Plus / Minus
Query: 5 gaattctgtcct-gatatcagcctacctttgtcatgc-gtcccattttctttaaaaggct 62
|||||||||||| || ||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 360 gaattctgtcctgga-atcagcctacccttgtcatgcag-cccattttctttaaaaggct 303
Query: 63 ttgaattaagattctgattcttgaacccaaaagtctttacaacagaatatatcaaatatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttgaattaagattctgattcttgaacccaaaagtctttacaacagaatatatcaaatatt 243
Query: 123 taatgaagtacatataataagggattccaagaggggactgaagtggaaacataagggttc 182
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 242 taatgaagtacatataataagggatttcaagaggggactgaagtggaaacataagggttc 183
Query: 183 tttggaaaatcagtactgttggaaggtgttttgctgaggcaaacaggtgaaggagtattt 242
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tttggaaaatcagtactggtggaaggtgttttgctgaggcaaacaggtgaaggagtattt 123
Query: 243 tcctgatgtggaaacaggtgaaaggctaaggcacaatcctgaaggaatgttttactgatg 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 122 tcctgatgtggaaacaggtcaaaggctaaggcacaatcctgaaggaatgttttgctgatg 63
Query: 303 tagacaaaagacaaaaaatggtctcctaaagcaagtttatgaaaggacaagtgataaaga 362
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cagacaaaagacaaaaaatgggctcctaaagcaagtttatgaaaggacaagtgataaaga 3
Query: 363 at 364
||
Sbjct: 2 at 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_m22.g1 MSMg01no335_m22.g1 CHROMAT_FILE:
MSMg01no335_m22.g1 PHD_FILE: MSMg01no335_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:41 2005
(536 letters)
>mm_chr8_19165536_19166467
Length = 932
Score = 955 bits (494), Expect = 0.0
Identities = 524/536 (97%), Gaps = 4/536 (0%)
Strand = Plus / Plus
Query: 1 tgtttcatagatgtgcctgactctgaagacaaatgagtcagccacagatcccagggatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttcatagatgtgcctgactctgaagacaaatgagtcagccacagatcccagggatgg 260
Query: 61 gaagatgggtgcctcagtcaggaaagcagttcatgactggcaggtactgacgctgtaaaa 120
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 261 gaagatgggtgcctcagtcaggaaagcagttcatgacaggcaggtaatgacgctgtaaaa 320
Query: 121 cgggaccaacctgtcgtccccctttggtgggtgtctgtgaatggcctttggtatttctgc 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cgagaccaacctgtcgtccccctttggtgggtgtctgtgaacggcctttggtatttctgc 380
Query: 181 cagattttgggtgtttctggatttgcaaggctggaaacgaacctggaaagccacctcaaa 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 cagattttgggtgtttctggatttgcaaggctggaaatgaacctggaaagccacctcaaa 440
Query: 241 ctgctttatattaagagccaaggaactcttgccctatcttggaagacaagaaggaaacag 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctttagagtaagagccaaggaactcttgccctatcttggaagacaagaaggaaacag 500
Query: 301 acaggactcaaggtggcccaggaacactggaaattttcttctattattgcctggcagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggactcaaggtggcccaggaacactggaaattttcttctattattgcctggcagcag 560
Query: 361 gagtggttggcaagtgattttaacccaaattccccacactcacacaagcagccatcttac 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gagtggttggcaagtgattttaacccaaattccccacactcacaaaagcagccatcttac 620
Query: 421 cctgatatgtgaacttccaaagagggcttgagccaattacttgaaagtctctatttaaca 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 cctgatatgtgaacttccaaagagggcttgagccaatt----gaaagtctctatttaaca 676
Query: 481 acacagaggaactgaagcacagaccttctggcatatgcctgctacaggggtggagc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acacagaggaactgaagcacagaccttctggcatatgcctgctacaggggtggagc 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 932
Length adjustment: 10
Effective length of query: 526
Effective length of database: 922
Effective search space: 484972
Effective search space used: 484972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
