BAC Information

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BAC

Clone NameMSMg01-336C15
Chromosome8 (Build37)
Map Location 42,245,701 - 42,379,138
singlet/doubletdoublet
Overlap geneFgl1, Pcm1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1
Downstream geneAsah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336C15.T7 (MSMg01no336_c15.b1)MSMg01-336C15.TJ (MSMg01no336_c15.g1)
ACCAG451250AG451251
length740738
length of high quality
(start - end)		563 (42 - 604)539 (69 - 607)
definitionCHROMAT_FILE: MSMg01no336_c15.b1 PHD_FILE: MSMg01no336_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:09 2005CHROMAT_FILE: MSMg01no336_c15.g1 PHD_FILE: MSMg01no336_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,378,580 - 42,379,138)(42,245,701 - 42,246,239)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCTTCTTACTCTTTGATTTGGGAGTTTTGTCCTTAGAGGCCAGGCTGG
CCTGGGCAGATGCTTTTCTTGTTTTAAATGTTTTAGTTACTGTTGTTGGG
TCTATAGGATCAGGCATACTGCTAAAGCTTTCCAAGGATTCTTCATCAAA
CTGACGTCTTCTCCTGCTTGTATCTGGTTGATTTTTGCGGTTACTATTTG
TAGCTTTCTCTACAGACTCTGTAAATCCAGTCTTGAAAAATGGTTTTTCT
ACTCCACCTTCTTGATCATATAACCATGGTGTCTTAGTGTTTTCAGCTTC
CTCTTCGGGCTGTTTCTGATTCCTTACCAAAAAGAAAAAGTTTTATAAGT
CACAATTTTGATTTATTTATATTTATTGCCATCTCCATAAATAGAATAGA
TTTTGGTTAATAAAATCAACAGGCTAGGAAAACACTTTCACAAAAACATA
AAACTTTTTTAATCAGAGAGCCCAGCAAGTGTGTTACAAAGAATATTTTT
GGGAGATACTGACTTATAAATTTTTTTAAAGAGTCATTTATTATTATTTC
TAAGTACACTGTAGCTATCTTCAGACACCCCAGAAGAGAGTGTCAGATCT
CATTATGAATGGTTGTGAAACCCCCTGTGGTTGGTGGGGATTGAACTCCG
GACTTTCTAAAAAAAATCATGGCTCTTTAATGGTGAGCCN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTCATTGGCCAAGCTGGCCTTGAACTCACA
GAGATCCACCTGCCTCTGCCTCCCAAGTGCTCATATTAAAGACATGAGCC
ACCACTGCCCAGTATTGGTAAACTTCTATAGAGTTAGACTAGGCATTTGC
AATGGAAGCTGTGGAGCTTCACAGTACATTTGACACTTTCAGTGTCAAAT
ATATATTGTGCACTTATCGACCACCAAAACAAAACAAAACAAAACAAAAA
TCCATGACGGAATTAGGACTAGAACAGCATTAGCTTTATACCCCTTTCAT
GTGTCTGTTACCTGCAGCCAGCCCTTTCTATTTAACCTTTCTTATTTTCT
TTTCTTCAAAATATATTGTACCCCTAGGTACATCTATTTGCATATGTATG
TATGTATATATGTGTGTGTGTAGTATTGGTTAGATTATGCATGTGGGAAA
GAATATTCTATGTATCTATCTTCTGACATGTAGATATACATGTATTTCAT
TATCTATCTATCCATTGGTAGACCACTAGGTTGGTTCCAATTCTTTGCTA
TTCTAAATAAAGCCGCAACAATCAAGAAAAGTTTTAAGGGAGGGAGCTTT
CATTTTGGCTCACAGGTTTCTTGGCAGGGGAAGGTAAAGCATCTTTTGGC
CCCATCTGTGGCCACAAAGGCTGTCCTGTGACCTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_c15.b1 MSMg01no336_c15.b1 CHROMAT_FILE:
MSMg01no336_c15.b1 PHD_FILE: MSMg01no336_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:09 2005
         (563 letters)



>mm_chr8_42378376_42379338
          Length = 963

 Score = 1081 bits (559), Expect = 0.0
 Identities = 559/559 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcttcttactctttgatttgggagttttgtccttagaggccaggctggcctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcctcttcttactctttgatttgggagttttgtccttagaggccaggctggcctgg 704

                                                                       
Query: 65  gcagatgcttttcttgttttaaatgttttagttactgttgttgggtctataggatcaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gcagatgcttttcttgttttaaatgttttagttactgttgttgggtctataggatcaggc 644

                                                                       
Query: 125 atactgctaaagctttccaaggattcttcatcaaactgacgtcttctcctgcttgtatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atactgctaaagctttccaaggattcttcatcaaactgacgtcttctcctgcttgtatct 584

                                                                       
Query: 185 ggttgatttttgcggttactatttgtagctttctctacagactctgtaaatccagtcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggttgatttttgcggttactatttgtagctttctctacagactctgtaaatccagtcttg 524

                                                                       
Query: 245 aaaaatggtttttctactccaccttcttgatcatataaccatggtgtcttagtgttttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaaaatggtttttctactccaccttcttgatcatataaccatggtgtcttagtgttttca 464

                                                                       
Query: 305 gcttcctcttcgggctgtttctgattccttaccaaaaagaaaaagttttataagtcacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcttcctcttcgggctgtttctgattccttaccaaaaagaaaaagttttataagtcacaa 404

                                                                       
Query: 365 ttttgatttatttatatttattgccatctccataaatagaatagattttggttaataaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttttgatttatttatatttattgccatctccataaatagaatagattttggttaataaaa 344

                                                                       
Query: 425 tcaacaggctaggaaaacactttcacaaaaacataaaacttttttaatcagagagcccag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcaacaggctaggaaaacactttcacaaaaacataaaacttttttaatcagagagcccag 284

                                                                       
Query: 485 caagtgtgttacaaagaatatttttgggagatactgacttataaatttttttaaagagtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caagtgtgttacaaagaatatttttgggagatactgacttataaatttttttaaagagtc 224

                              
Query: 545 atttattattatttctaag 563
           |||||||||||||||||||
Sbjct: 223 atttattattatttctaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_c15.g1 MSMg01no336_c15.g1 CHROMAT_FILE:
MSMg01no336_c15.g1 PHD_FILE: MSMg01no336_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:09 2005
         (539 letters)



>mm_chr8_42245501_42246439
          Length = 939

 Score = 1042 bits (539), Expect = 0.0
 Identities = 539/539 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcattggccaagctggccttgaactcacagagatccacctgcctctgcctcccaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcattggccaagctggccttgaactcacagagatccacctgcctctgcctcccaagt 260

                                                                       
Query: 61  gctcatattaaagacatgagccaccactgcccagtattggtaaacttctatagagttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcatattaaagacatgagccaccactgcccagtattggtaaacttctatagagttaga 320

                                                                       
Query: 121 ctaggcatttgcaatggaagctgtggagcttcacagtacatttgacactttcagtgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggcatttgcaatggaagctgtggagcttcacagtacatttgacactttcagtgtcaa 380

                                                                       
Query: 181 atatatattgtgcacttatcgaccaccaaaacaaaacaaaacaaaacaaaaatccatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatatattgtgcacttatcgaccaccaaaacaaaacaaaacaaaacaaaaatccatgac 440

                                                                       
Query: 241 ggaattaggactagaacagcattagctttatacccctttcatgtgtctgttacctgcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaattaggactagaacagcattagctttatacccctttcatgtgtctgttacctgcagc 500

                                                                       
Query: 301 cagccctttctatttaacctttcttattttcttttcttcaaaatatattgtacccctagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagccctttctatttaacctttcttattttcttttcttcaaaatatattgtacccctagg 560

                                                                       
Query: 361 tacatctatttgcatatgtatgtatgtatatatgtgtgtgtgtagtattggttagattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatctatttgcatatgtatgtatgtatatatgtgtgtgtgtagtattggttagattat 620

                                                                       
Query: 421 gcatgtgggaaagaatattctatgtatctatcttctgacatgtagatatacatgtatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatgtgggaaagaatattctatgtatctatcttctgacatgtagatatacatgtatttc 680

                                                                      
Query: 481 attatctatctatccattggtagaccactaggttggttccaattctttgctattctaaa 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attatctatctatccattggtagaccactaggttggttccaattctttgctattctaaa 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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