Query= MSMg01no336_h02.b1 MSMg01no336_h02.b1 CHROMAT_FILE:
MSMg01no336_h02.b1 PHD_FILE: MSMg01no336_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:30 2005
(309 letters)
>mm_chr8_111687130_111687834
Length = 705
Score = 485 bits (251), Expect = e-141
Identities = 290/303 (95%), Gaps = 4/303 (1%)
Strand = Plus / Minus
Query: 5 gaattcagctgaatacaattcggagactggatggagaatgacacacaactcagatgattg 64
||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 462 gaatttagttgaatactattcggagactggatggagaatgacacacaactcagatgatag 403
Query: 65 ggagagatacttgggggaacttactgcatctagccatcagaagatgggagtaacgagaca 124
| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 gtagagatac-tgggggaacttactgcatctagccatcagaagacgggagtaacgagaca 344
Query: 125 cagtggttttcacatagcaagtacacattctggcagtggtggggggcctgggaaagagng 184
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 343 cagtggttttcaaatagcaagtacacatcctggcagtggtggggggcctgggaaagag-g 285
Query: 185 acacnggcaaggcccagttcggaggatgtaagcaatctggttacaaatttataatcaaca 244
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 284 acac-ggcaaggcccagttcggaggatggaagcaatctggttacaaatttataatcaaca 226
Query: 245 ggtttcaagaagctttttcagagggctggagagatggctcagcggttaagagcactgact 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ggtttcaagaagc-ttttcagagggctggagagatggctcagcggttaagagcactgact 167
Query: 305 gct 307
|||
Sbjct: 166 gct 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 705
Length adjustment: 9
Effective length of query: 300
Effective length of database: 696
Effective search space: 208800
Effective search space used: 208800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_h02.g1 MSMg01no336_h02.g1 CHROMAT_FILE:
MSMg01no336_h02.g1 PHD_FILE: MSMg01no336_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:30 2005
(500 letters)
>mm_chr8_111626000_111626897
Length = 898
Score = 820 bits (424), Expect = 0.0
Identities = 481/500 (96%), Gaps = 3/500 (0%)
Strand = Plus / Plus
Query: 1 tgtatttatatagaaaatttgaaacttcccaacaactgggattatgtttcagtatcattt 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtatttatatagaatttttgaaacttcccaacaactgggattatgtttcagtatcattt 261
Query: 61 agtttttaaaatttagttgaattaattttacgtgtgtgggtattgtgtttgcatgtatgt 120
||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 262 agttttt-aaatttagttgaattaattttacatgtgtgggtattgcgtttgcatgtatgt 320
Query: 121 ctgcgtagtagttgagtgtctgttgtccacgaggccagaagaatctagaactgaataatc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctgcgtagtagttgagtgtctgttgtccatgaggccagaagaatctagaactgaataatc 380
Query: 181 tagaactggagttacggagagttgtgtgctgctgtgttggtgctgggaatcgaaccctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaactggagttacggagagttgtgtgctgctgtgttggtgctgggaatcgaaccctgg 440
Query: 241 tcctctggaatagcagccaggctcttcgatgcaagacctcttctgcagcacctctttatc 300
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 441 tcctctggaatagcagccaggctctttgatgcaagacctct-ctacagcacctctttatc 499
Query: 301 actttaagtccataatgcctgggacacagatgatgggccgggcagcagtacatgtttatt 360
||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 actttaaattcacaatgcctggg-cacagatgatgggccgggcagcagtacatgtttatt 558
Query: 361 gaactgaggtaaggcgagttctcggaggccattccctcacagccagctttgggttcactc 420
|||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct: 559 gaactgaggtaaggcgagttcttggaggccattcccacatagccagctttgggttcactc 618
Query: 421 ttgctgccgccctgattcggccatggctctcacttctagttatctgcgacactcttgaac 480
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 619 ttgctgccgccctgattcggccatggctctcacttctagtcagcggcgacactcttgaac 678
Query: 481 tgctgtgctttttgccaggt 500
||||||||||||||||||||
Sbjct: 679 tgctgtgctttttgccaggt 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 898
Length adjustment: 10
Effective length of query: 490
Effective length of database: 888
Effective search space: 435120
Effective search space used: 435120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
