BAC Information

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BAC

Clone NameMSMg01-336I01
Chromosome8 (Build37)
Map Location 109,412,551 - 109,413,198
singlet/doubletsinglet
Overlap gene5830457O10Rik
Upstream geneEdc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3
Downstream geneCirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336I01.T7 (MSMg01no336_i01.b1)MSMg01-336I01.TJ (MSMg01no336_i01.g1)
ACCAG451506AG451507
length713813
length of high quality
(start - end)
652 (42 - 693)162 (72 - 233)
definitionCHROMAT_FILE: MSMg01no336_i01.b1 PHD_FILE: MSMg01no336_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:34 2005CHROMAT_FILE: MSMg01no336_i01.g1 PHD_FILE: MSMg01no336_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTATTTCTCTTTTTAGGCCACTTTTTTTTTGCAGCTTACACATCATAC
ACAGTATCAGTCAACAAAAGCTTATTTGAAAGAACTTGGTCTGTGCAGCC
TTGGCCTTTTACAATCTTTATGAATTATAATCAAAGTTAGACTGTCAAAT
GCTGAATTGCTTACTTCCCAATCTAAAATATTAGCTATTCTCAATAGGAG
TCTAAAGTCTTGCATGAGTTATATTTAGTCATCACACTAGTGAGTCATCA
TCTAGGTGTCAGCTATCTAGTCATTTAGTGACCTGAGCGTGATCATACAG
TAGCTTTCCACCTTACAAGCTGGAACCGGAACTCAGCCTTTTGAATTTGG
ATTGATTCACTTTGGAGATGCTCTGGCAGCAGGACTCAGTGCTTTTGATC
CAGTGTATGAGATTAAAACAGAGGGATTGGAAATTCAAAGATGGACCTGG
TCTCAAAGGTTAAGTTCTGCAAAGGGTCTTATAAGCACAAAGATCTTTGC
CTTTTCTCGGTAGGGCCACAGCCTCTTTGGGTACAGAGACTCACTAGCTC
ACAAATCTAGTGTTGGTGCCCTTGTGCTGATGTGAACAGCACTTACACAT
GTTCCTGGCTGCACGCTCTCCTGATTCCTCTTCATTCTTGCTGATACCTG
GNTCTGTCCTTTA
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTGGTGGAAGGAGAGAACTGACTCTTG
TAAATAATAATCTGATTTCTAGATTTTTTTTTCGAGGCAGGGTTTCTCTT
TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA
ACTCAGAAATCCACCTGGCTCTGCCTCCCAAGTGCTGGGAGGCTGGTTGT
GCGCCACCACCGCCCGGCTACCTAGTGACTGTTTTCTGTCTCCCTCCTGG
GAACATAAGTTTCTTTGTATCCAGCCTCGCCCCGCACTCTCACGCACCTT
GCCATCGTTACCCTACCACACCTGTGCTACGCGGCCCTGCACATTTTCAT
ATACCAGTTCGACCCACAACACCGGTTTACTCACCCCTCTCACCTTACCT
ATATCCCGATTCACCACCCCCCCAATTCGCCCCCTCAATGTACCCCCCCC
CTCATCACCGCCCCCCAATGCGCACTCCCTCCTCAACCCCTGTACACCCA
TATCTTTCTCACCCCCCCCGCTAACACACCCCTTTCTATTTCCCCCCACC
CACTCTTCAATCCACCCCCAATGATTCAATAATTTTCCCTCGACATAATC
TCCATTCATATCCCTCCTATGTCCCCAAATCACAGCCCCCTCCCCCCACA
CTCAATTTTCCCCGCCCCCCGCACAATAATATATAACAACTATGTCACCC
CCACCACTTTCTCCCCCAACCTCTTCCCTCTCTTTCACCACCACCATCAC
ACTTATAACTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_i01.b1 MSMg01no336_i01.b1 CHROMAT_FILE:
MSMg01no336_i01.b1 PHD_FILE: MSMg01no336_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:34 2005
         (652 letters)



>mm_chr8_109412347_109413398
          Length = 1052

 Score = 1207 bits (624), Expect = 0.0
 Identities = 642/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatttctctttttaggccactttttttttgcagcttacacatcatacacagt 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattctttattgctttttttaggccactttttttttgcagcttacacatcatacacagt 793

                                                                       
Query: 65  atcagtcaacaaaagcttatttgaaagaacttggtctgtgcagccttggccttttacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 atcagtcaacaaaagcttatttgaaagaacttggtctgtgcagccttggccttttacaat 733

                                                                       
Query: 125 ctttatgaattataatcaaagttagactgtcaaatgctgaattgcttacttcccaatcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctttatgaattataatcaaagttagactgtcaaatgctgaattgcttacttcccaatcta 673

                                                                       
Query: 185 aaatattagctattctcaataggagtctaaagtcttgcatgagttatatttagtcatcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaatattagctattctcaataggagtctaaagtcttgcatgagttatatttagtcatcac 613

                                                                       
Query: 245 actagtgagtcatcatctaggtgtcagctatctagtcatttagtgacctgagcgtgatca 304
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 612 actagtgagtcatcatctaggtgtcagcgacctagtcatttagtgacctgagcgtgatca 553

                                                                       
Query: 305 tacagtagctttccaccttacaagctggaaccggaactcagccttttgaatttggattga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tacagtagctttccaccttacaagctggaaccggaactcagccttttgaatttggattga 493

                                                                       
Query: 365 ttcactttggagatgctctggcagcaggactcagtgcttttgatccagtgtatgagatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttcactttggagatgctctggcagcaggactcagtgcttttgatccagtgtatgagatta 433

                                                                       
Query: 425 aaacagagggattggaaattcaaagatggacctggtctcaaaggttaagttctgcaaagg 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 432 aaacagagggattggaaattcaaagatggacctggtctcaaaagttaagttctgcaaagg 373

                                                                       
Query: 485 gtcttataagcacaaagatctttgccttttctcggtagggccacagcctctttgggtaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcttataagcacaaagatctttgccttttctcggtagggccacagcctctttgggtaca 313

                                                                       
Query: 545 gagactcactagctcacaaatctagtgttggtgcccttgtgctgatgtgaacagcactta 604
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gagactcactagctcacagatctagtgttggtgcccttgtgctgatgtgaacagcactta 253

                                                           
Query: 605 cacatgttcctggctgcacgctctcctgattcctcttcattcttgctg 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cacatgttcctggctgcacgctctcctgattcctcttcattcttgctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)