BAC Information

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BAC

Clone NameMSMg01-336K23
Chromosome8 (Build37)
Map Location 69,371,341 - 69,570,599
singlet/doubletdoublet
Overlap geneBC053440
Upstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2, Npy5r, Npy1r
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336K23.T7 (MSMg01no336_k23.b1)MSMg01-336K23.TJ (MSMg01no336_k23.g1)
ACCAG451643AG451644
length741751
length of high quality
(start - end)		494 (66 - 559)515 (69 - 583)
definitionCHROMAT_FILE: MSMg01no336_k23.b1 PHD_FILE: MSMg01no336_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:49 2005CHROMAT_FILE: MSMg01no336_k23.g1 PHD_FILE: MSMg01no336_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,371,341 - 69,371,834)(69,570,085 - 69,570,599)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCCATGTACCATGTGGATCCTCTTTATATCACAGCACTTATACTAT
TTTCTTTTTAATATATTAAATACACAAAAAGAGAGAGAGAGAAAGAAAAA
AGAATGTTCCCCATAGGTTTATATATTTGCTTTTTTGGGTTTTTTTGTTT
TGTTTTGTTTTTTGTTTTTCCAAACAGGGTTTCTCTGTATAGCCCTGAAT
GCTTAGTCACCAAGAAACAGCACTCTTTGAAAGGATTAGAAGGATTAGGA
GGTGTGGCCTTGTTGGAGGAAGTATGTCATTAGGGGTGGGCTTTGAGGTT
TCAAAAGTCCATGCCATGTTCAGTTTCCCTTTATGTCTGTGGTTCAGAAT
GTCCCTAACAGCTACTTGTCTAGCACCATGCCTGGTATTCTTGTTGCCAT
GTTCCCCACCATGATGATAATTGGCTAAACCTCTAAAGCATTAAGCAAAG
CTCCAAACATGTGCTTTCTTTTTTAGGAGTTGGCTTTGTTATGGTATCTC
TTCATGCAATAGGATGGTGACCAGGCAGCAAGTAGACTCCTGGTGGGCTC
ATTAGGATCATACCCTAGTGAGACATTGGAGTTGGCATTAAGACTGGCTT
TGGGAAAATATATTTTGCCTGTACCAACCGACCAAAATAACTAATGACCC
TACACCTGGTGGGGGAACTTTGCACCCGTTGTACCTTTGTT

ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTATAACACAGGGAAGCTTCACTTTATGC
CTTGGTTTCTTGAATGTTGGAATTTTTGGTCAACCTTACCTTACTTGACT
AAATTTTCTCTCTGTTAAGGTTAAATTCACTTTTCCTACAAGGTTATGCA
CATCTTCCAAAATTATTTGCATATTTTTCTAACTTTTGAGTTGTATATTA
AGTTCCTGTGATCTTAAAACATAGCAGTATATATTTCAGACTATAATTTT
TCCTCATTGCTGTAGTTGTATTGAACTTTTTAATACATAAATTTTCTAAC
TTCAGTTTTATCTACATGTTCTATAATGCTACATATTATTTTATTTTAAT
TTCCATATAGAAATAACATTTTATGAATTATTTGTTTCTAATTCTTCAAT
TAAGTTACACTTCTACTAAGTTTTAATTAGTGTATGCTAGTCTATTACTT
CATCTTGGAACTTTGATCCCAGAAAGGGTCAGTTTACACAAATGCCGATT
GGTACTTGAGTGGAAGTTGTTTTTCATTTCTGAAATTATAATTACTGAAT
CAGAATACATAATCACACTTATAAAATATAACTAAGNAATTTAATTTACT
TGGGTTTACTGAAAAGCCATATAGTTACAGCTGGAAATGGAAGTGAATTT
ACTTATCCCTATCATGCCTTGGATTAAAAACAACCCCGTTTGGGTTGGGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_k23.b1 MSMg01no336_k23.b1 CHROMAT_FILE:
MSMg01no336_k23.b1 PHD_FILE: MSMg01no336_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:49 2005
         (494 letters)



>mm_chr8_69371141_69372034
          Length = 894

 Score =  893 bits (462), Expect = 0.0
 Identities = 486/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggatcctctttatatcacagcacttatactattttctttttaatatattaaatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggatcctctttatatcacagcacttatactattttctttttaatatattaaatacac 260

                                                                       
Query: 61  aaaaagagagagagagaaagaaaaaagaatgttccccataggtttatatatttgcttttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaaaagagagagagagaaagaaaaaagaatgttccccataggtttatatatttgtttttt 320

                                                                       
Query: 121 tgggtttttttgttttgttttgttttttgtttttccaaacagggtttctctgtatagccc 180
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 321 tgggtttttttgttttgttttgttttttgtttttcgagacagggtttctctgtatagccc 380

                                                                       
Query: 181 tgaatgcttagtcaccaagaaacagcactctttgaaaggattagaaggattaggaggtgt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tgaatgcttagtcaccaagaaacagcactctttaaaaggattagaaggattaggaggtgt 440

                                                                       
Query: 241 ggccttgttggaggaagtatgtcattaggggtgggctttgaggtttcaaaagtccatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ggccttgttggaggaagtatgtcattaggggtgggctttgaggtttcaacagtccatgcc 500

                                                                       
Query: 301 atgttcagtttccctttatgtctgtggttcagaatgtccctaacagctacttgtctagca 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttcagtttccctttgtgtctgtggttcagaatgtccctaacagctacttgtctagca 560

                                                                       
Query: 361 ccatgcctggtattcttgttgccatgttccccaccatgatgataattggctaaacctcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatgcctggtattcttgttgccatgttccccaccatgatgataattggctaaacctcta 620

                                                                       
Query: 421 aagcattaagcaaagctccaaacatgtgctttcttttttaggagttggctttgttatggt 480
           |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 aagctttaagcaaagctccaaacatgtgctttcttttttagaagttggctttgttatggt 680

                         
Query: 481 atctcttcatgcaa 494
           ||||||||||||||
Sbjct: 681 atctcttcatgcaa 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_k23.g1 MSMg01no336_k23.g1 CHROMAT_FILE:
MSMg01no336_k23.g1 PHD_FILE: MSMg01no336_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:49 2005
         (515 letters)



>mm_chr8_69569885_69570799
          Length = 915

 Score =  988 bits (511), Expect = 0.0
 Identities = 514/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctataacacagggaagcttcactttatgccttggtttcttgaatgttggaatttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 actctataacacagggaagcttcactttatgccttggtttcttgaatgttggaatttttg 656

                                                                       
Query: 61  gtcaaccttaccttacttgactaaattttctctctgttaaggttaaattcacttttccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtcaaccttaccttacttgactaaattttctctctgttaaggttaaattcacttttccta 596

                                                                       
Query: 121 caaggttatgcacatcttccaaaattatttgcatatttttctaacttttgagttgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caaggttatgcacatcttccaaaattatttgcatatttttctaacttttgagttgtatat 536

                                                                       
Query: 181 taagttcctgtgatcttaaaacatagcagtatatatttcagactataatttttcctcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 535 taagttcctgtgatcttaaaacatagcagtatatatttcagactatattttttcctcatt 476

                                                                       
Query: 241 gctgtagttgtattgaactttttaatacataaattttctaacttcagttttatctacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gctgtagttgtattgaactttttaatacataaattttctaacttcagttttatctacatg 416

                                                                       
Query: 301 ttctataatgctacatattattttattttaatttccatatagaaataacattttatgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttctataatgctacatattattttattttaatttccatatagaaataacattttatgaat 356

                                                                       
Query: 361 tatttgtttctaattcttcaattaagttacacttctactaagttttaattagtgtatgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tatttgtttctaattcttcaattaagttacacttctactaagttttaattagtgtatgct 296

                                                                       
Query: 421 agtctattacttcatcttggaactttgatcccagaaagggtcagtttacacaaatgccga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agtctattacttcatcttggaactttgatcccagaaagggtcagtttacacaaatgccga 236

                                              
Query: 481 ttggtacttgagtggaagttgtttttcatttctga 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttggtacttgagtggaagttgtttttcatttctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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