BAC Information

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BAC

Clone NameMSMg01-336P13
Chromosome8 (Build37)
Map Location 31,662,037 - 31,828,779
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P13.T7 (MSMg01no336_p13.b1)MSMg01-336P13.TJ (MSMg01no336_p13.g1)
ACCAG451862AG451863
length732740
length of high quality
(start - end)		540 (45 - 584)480 (74 - 553)
definitionCHROMAT_FILE: MSMg01no336_p13.b1 PHD_FILE: MSMg01no336_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:11 2005CHROMAT_FILE: MSMg01no336_p13.g1 PHD_FILE: MSMg01no336_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,662,037 - 31,662,572)(31,828,300 - 31,828,779)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATTTCCAGAGTGTGCTTCATGTATGTTTGTAATGCTTACCTCAA
GGTCCGTGCAACAGAACACCTCTGCTAAAGTCAGAAAGAATTTAGCTTGA
ATTTACCTCCCTTACCAACTTATTGAAGGGTTATAGCGAAATGCATACCT
TAGTTAGTTTATGTTCCAATTTCTTCATGCACAAATATAAGAAAGAATTC
TTGGAGCTCCTCTGACCCTCTCCCAACTCCAGACCCCAGATCACTTAAAT
GCCTTTTCCTGCTGGGTTCCTCCAGTCCTTACCCATTAGCACATCATCTC
CACAATTTCAGGACTAGCCTGGATATACATATCTTGCACTATTGTTCCCC
TCAGCTGCCTACCAGGCTGACTCCGTATTTCCAAGCCTAGCTCCCATTAG
TTAATGTACCAGCCCAACCTGAATCAAGCTAAACCTAACATCAGACACAG
AACCAAAGAGAGATGTTCACATGCCCAAGCCATATCACAAAAATATAAAC
AATATGAAAGACAAAATAATAAATTCCTCCTCAGAATCACTAGTCCTATA
GAAATGGTCTCCCATGAGAATTGCCTACACGAACCCTGGGGCACAGAATT
TAAAAGAATAATCATAAACTTTATCAAATATTTCAATGATGTTAAAGAAA
AATTAAAAAAATTTCTNAAACCCGTGAACTTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACCACAAGAAGCAGAAATAAAACA
TGTAACTAAGAGGAAGTACCTCCTTAGTTCCTCCTCCAACACAGAGCTAT
TATGGCCTCACTTCCTGTCGGCCACTTCCTGCTCTTGAAACAGTGTGCTA
CCCCTCCTAACTCCTCTCCAATTCTCAGTTGTCTTTAATACTTCTAAGTT
CAAATTGAACATTTGGTATTTTGTTCCAGTTGTATCTCTTAATCTGTAGA
TATCCAGCATGGATCAACAGCTAGCACCCACAGGTCTGCAGCTTGTTTTT
AAACCAAGGCTTATTGGATATAACAATTCCACGTGCCAACGTGTCACTTA
TGGTCTTTGGAGATGGGTACTTTCGGGAGTGATGTATTGGACTTTGAACC
AAACAAGTTGTCCAAACAGGGTTAAAAGAATGCTACATGGTGAACAATGC
CTTGTGGAACCAGGAGACAGGCTCCAGGAGAAAAGGCAGGGGGCCTTTTA
CCACAGGTTCATTTTGTTTCCAGACTCATTCTTAGAACTGATTTTGTGAC
AAATGTTTACATTCAGNTTTATAAAAGACATTCATTCTTGTTGGATGTCA
GAATATAACTATGGAACCCATTCTGGTCAGTGAACTCCGAAACTGGAGGT
GGACTCCTGCCTTGGTTTCATGGCCTTCCCAGAAAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p13.b1 MSMg01no336_p13.b1 CHROMAT_FILE:
MSMg01no336_p13.b1 PHD_FILE: MSMg01no336_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:11 2005
         (540 letters)



>mm_chr8_31661833_31662772
          Length = 940

 Score = 1013 bits (524), Expect = 0.0
 Identities = 533/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatttccagagtgtgcttcatgtatgtttgtaatgcttacctcaaggtccgtg 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattagaagagtgtgcttcatgtatgtttgtaatgcttacctcaaggtccgtg 264

                                                                       
Query: 65  caacagaacacctctgctaaagtcagaaagaatttagcttgaatttacctcccttaccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacagaacacctctgctaaagtcagaaagaatttagcttgaatttacctcccttaccaa 324

                                                                       
Query: 125 cttattgaagggttatagcgaaatgcataccttagttagtttatgttccaatttcttcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttattgaagggttatagcgaaatgcataccttagttagtttatgttccaatttcttcat 384

                                                                       
Query: 185 gcacaaatataagaaagaattcttggagctcctctgaccctctcccaactccagacccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcacaaatataagaaagaattcttggagctcctctgaccctctcccaactccagacccca 444

                                                                       
Query: 245 gatcacttaaatgccttttcctgctgggttcctccagtccttacccattagcacatcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatcacttaaatgccttttcctgctgggttcctccagtccttacccattagcacatcatc 504

                                                                       
Query: 305 tccacaatttcaggactagcctggatatacatatcttgcactattgttcccctcagctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccacaatttcaggactagcctggatatacatatcttgcactattgttcccctcagctgc 564

                                                                       
Query: 365 ctaccaggctgactccgtatttccaagcctagctcccattagttaatgtaccagcccaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaccaggctgactccgtatttccaagcctagctcccattagttaatgtaccagcccaac 624

                                                                       
Query: 425 ctgaatcaagctaaacctaacatcagacacagaaccaaagagagatgttcacatgcccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgaatcaagctaaacctaacatcagacacagaaccaaagagagatgttcacatgcccaa 684

                                                                   
Query: 485 gccatatcacaaaaatataaacaatatgaaagacaaaataataaattcctcctcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccatatcacaaaaatataaacaatatgaaagacaaaataataaattcctcctcag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_p13.g1 MSMg01no336_p13.g1 CHROMAT_FILE:
MSMg01no336_p13.g1 PHD_FILE: MSMg01no336_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:12 2005
         (480 letters)



>mm_chr8_31828100_31828979
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaccacaagaagcagaaataaaacatgtaactaagaggaagtacctccttagttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggaccacaagaagcagaaataaaacatgtaactaagaggaagtacctccttagttcctc 621

                                                                       
Query: 61  ctccaacacagagctattatggcctcacttcctgtcggccacttcctgctcttgaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 ctccaacacagagctattatggcctcacttcctgtcggccacttcctgctcctgaaacag 561

                                                                       
Query: 121 tgtgctacccctcctaactcctctccaattctcagttgtctttaatacttctaagttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgctacccctcctaactcctctccaattctcagttgtctttaatacttctaagttcaa 501

                                                                       
Query: 181 attgaacatttggtattttgttccagttgtatctcttaatctgtagatatccagcatgga 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 attgaacatttggtattttgttccagttgtatctcttaatctctagatatccagcatgga 441

                                                                       
Query: 241 tcaacagctagcacccacaggtctgcagcttgtttttaaaccaaggcttattggatataa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 tcaacagctagcacccacaggtctgcagcttgtttttaaaccaaggcttattggatatga 381

                                                                       
Query: 301 caattccacgtgccaacgtgtcacttatggtctttggagatgggtactttcgggagtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caattccacgtgccaacgtgtcacttatggtctttggagatgggtactttcgggagtgat 321

                                                                       
Query: 361 gtattggactttgaaccaaacaagttgtccaaacagggttaaaagaatgctacatggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtattggactttgaaccaaacaagttgtccaaacagggttaaaagaatgctacatggtga 261

                                                                       
Query: 421 acaatgccttgtggaaccaggagacaggctccaggagaaaaggcagggggccttttacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaatgccttgtggaaccaggagacaggctccaggagaaaaggcagggggccttttacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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