BAC Information

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BAC

Clone NameMSMg01-336P24
Chromosome8 (Build37)
Map Location 44,158,883 - 44,159,245
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P24.T7 (MSMg01no336_p24.b1)MSMg01-336P24.TJ (MSMg01no336_p24.g1)
ACCAG451884AG451885
length750775
length of high quality
(start - end)		436 (41 - 476)---
definitionCHROMAT_FILE: MSMg01no336_p24.b1 PHD_FILE: MSMg01no336_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:14 2005CHROMAT_FILE: MSMg01no336_p24.g1 PHD_FILE: MSMg01no336_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTTATATCATACAACTTGATAAGATAATAAGCTAATTCCTGTAGCACA
GTCCTAAGGGATTGGATACTTCATATCATCTCATGAATAACTCTGCTTTG
TAAGACCTTGTTTTGAGCTAAGGAGTTAAGGGTATGCTTTATATAAAGGT
ATATTCTTCCCTCCTCTTTTTTCTTTCTCTTATCCTCTCCCTCTTTCCTC
CCATACCTTCTCCTCATCCCTGTCTCCACCATCCTGCTCCTTGTATTTCT
CCTCCTCCTTTTCATCTTTCTTTTCCTTTTCCTCATGGGACCTCAGTTAC
ATTAAAGAAAAGAAGTTTCATGCAATGTGCATTTTTTTATGTATGACATT
GAAAAGAAATTCCAAATTAGAACAACATCTCTGTATAATTCAAAGTCTTT
TAACAACCAAGACACTCTTCATAAAAGGGAAATATTACAGNTTTAATCTA
AGTACATATCCTTACCTGTAGATATGTATAGGCCTCTCCTCTTATCAAAG
GAACTTCTTACTGAAACTGATGGAGACTATTAAGGGAGATATAACTTGTC
CAATGCCGAAAAAAATGGCTTGGGGTACTGAACCCCATTTCCCCATTTTA
GGGGAACCCCCATAAATCATTTCTTGGAAAATTTATGAAAGGATACGGGA
AGGTGGGACACCCTAAAAAAAGAAACCGGGGGGAAAAAGGGCTTTTTTTT


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTATTTCTTTANNATGAAATCCAGCATATATCCTT
ATATCTGACTGATGCTATTGGATGGCATATTTCTCCTGGAGCAAGTAAGG
AGAGAAGGCCTCTGGNNCGTAATANCGAACAGGTGNNCNNTTTTTTCCAA
ACCGAGTTTGGCNNNNANNNNNCCTTCTGGGGAAGAAAAGGAAAAAAAAT
TGGCGGGAAATATTACCCCAAATAATTTCCAGGGGTTAAAAGGGCCAATA
ACCCCCGGTTTGGAGGGGCGGAGACCCTTAAAACCCTTTCCCCAGTGGAC
CCACCGGGTTGGGAAAATGGGGAAAAACAATTTTGGGGGGGGGGCTCCCA
ACCCCCCTCGGGGGGGGGGGGGGGATATTCCTAAAGGGGCCTTTTAAGGG
GGGGGCACACTTTTTTTGTTAAAAAAAAACAATTTTTTCTGGTGTATATT
ATACCCGCTAAAAAAATCCCCCCCTTTTTTCGGTTTCCCCCCCCCGGGGG
TCGGTTCGGAGCACAACAACCACAAAGAGTAATGTTTTTGGTGCACTGCN
CCCCATCTCTATTTTTTTCTCTCCTATCCCCCCCCTTATCCACCCCCCCC
CATCTCATTTTTACCCCCCCCACCCAAATAACCACCCCCTTATCCCATAA
CACCACCAACCCCCTTCCCCCCCCCCCTATTATCCCACAAATATCTCTCC
CCGCCGGCGCGGGCGGGGTGGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p24.b1 MSMg01no336_p24.b1 CHROMAT_FILE:
MSMg01no336_p24.b1 PHD_FILE: MSMg01no336_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:14 2005
         (436 letters)



>mm_chr8_44158883_44159718
          Length = 836

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttatatcatacaacttgataagataataagctaattcctgtagcacagtcc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaattcattttagatcatacaacttgataagataataagctaattcctgtagcacagtcc 304

                                                                       
Query: 65  taagggattggatacttcatatcatctcatgaataactctgctttgtaagaccttgtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taagggattggatacttcatatcatctcatgaataactctgctttgtaagaccttgtttt 244

                                                                       
Query: 125 gagctaaggagttaagggtatgctttatataaaggtatattcttccctcctcttttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 243 gagctaaggagttaagggtatgctttatataaaggtatattcttccctccttttttttct 184

                                                                       
Query: 185 ttctcttatcctctccctctttcctcccataccttctcctcatccctgtctccaccatcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttctcttatcctctccctctttcctcccataccttctcctcatccctgtctccaccatcc 124

                                                                       
Query: 245 tgctccttgtatttctcctcctccttttcatctttcttttccttttcctcatgggacctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgctccttgtatttctcctcctccttttcatctttcttttccttttcctcatgggacctc 64

                                                                       
Query: 305 agttacattaaagaaaagaagtttcatgcaatgtgcatttttttatgtatgacattgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  agttacattaaagaaaagaagtttcatgcaatgtgcatttttttatgtatgacattgaaa 4

              
Query: 365 aga 367
           |||
Sbjct: 3   aga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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