Query= MSMg01no337_b11.b1 MSMg01no337_b11.b1 CHROMAT_FILE:
MSMg01no337_b11.b1 PHD_FILE: MSMg01no337_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:21 2005
(578 letters)
>mm_chr8_5029638_5030615
Length = 978
Score = 1064 bits (550), Expect = 0.0
Identities = 568/574 (98%)
Strand = Plus / Minus
Query: 5 gaattctgcacgatatttaaaagacaccagaaatcactgcttttaacatcatggaatagt 64
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 734 gaattctgcacgatatttaaaagacactagaaatcactgcttttaacatcatggaatagt 675
Query: 65 tttacatctccatgaagcaggatttctttgcatcatttaatataacgaggagtttataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttacatctccatgaagcaggatttctttgcatcatttaatataacgaggagtttataca 615
Query: 125 ttggtgtagttcatatatttacattccaaaccaagacttaaaaactcaaagcataaggaa 184
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct: 614 ttggtgtagttcatatatttacattccaacccaagacttaaaaactcaaagcttaaagaa 555
Query: 185 aggtttatgtaagtgaatcaataaacagtgaaccaggtattgagaaaataaagtgatact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aggtttatgtaagtgaatcaataaacagtgaaccaggtattgagaaaataaagtgatact 495
Query: 245 aacttgtgaactatacttggaacatatccaagacaaaccgtttgaagatagaatcctgta 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 494 aacttgtgaactatacttggaacatatccaagacaaaccatttgaagatagaatcctgta 435
Query: 305 gttctgtagttgagaaattggcacaaaaggaatcatagacctacataaaacagataaaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gttctgtagttgagaaattggcacaaaaggaatcatagacctacataaaacagataaaat 375
Query: 365 atcaaatggttaagaagaaagtattcacaatattgaattaagcaatgaatcttcattttc 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atcaaattgttaagaagaaagtattcacaatattgaattaagcaatgaatcttcattttc 315
Query: 425 tacaaaatgctaaagtgaacaccaaagggtaaaaagtatttgcagttttataagtatcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tacaaaatgctaaagtgaacaccaaagggtaaaaagtatttgcagttttataagtatcat 255
Query: 485 taagaaaatgagttcctggtaaactcaggctacagaataagacatagttaaaagaaagaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taagaaaatgagttcctggtaaactcaggctacagaataagacatagttaaaagaaagaa 195
Query: 545 agaaagaaagaaagaaagaaagaaagaaagaaag 578
||||||||||||||||||||||||||||||||||
Sbjct: 194 agaaagaaagaaagaaagaaagaaagaaagaaag 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 21
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_b11.g1 MSMg01no337_b11.g1 CHROMAT_FILE:
MSMg01no337_b11.g1 PHD_FILE: MSMg01no337_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:21 2005
(491 letters)
>mm_chr8_5011057_5011947
Length = 891
Score = 903 bits (467), Expect = 0.0
Identities = 485/491 (98%)
Strand = Plus / Plus
Query: 1 agctatgtacattttcttttcagttctcttgggtcctacttagccacttgttctctgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctatgtacattttcttttcagttctcttgggtcctacttagccacttgttctctgttc 260
Query: 61 atgtctttgactgtgtgagttgaactggcatgtatagtcataaagcattctattctagaa 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 atgtctttgactgtgtgagttgaactggcatatatagtcataaagcattctattctagaa 320
Query: 121 aaacagcatggaagtgttgatggaatagatttagacccactgtcattgagatcatgctct 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aaacagcatggaagtgttgatggaatagatttagacccactgtcattgatatcatgctct 380
Query: 181 tagaagcatgtgttataaattatgtgcattttgtatgtggaaatgtaataacacattaaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tagaagcatgtgttataaattatgtgcatttcgtatgtggaaatgtaataacacattaaa 440
Query: 241 aaccctttatttttctttatttttaaactttaattttttaaaaaaggaaatcccatactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccctttatttttctttatttttaaactttaattttttaaaaaaggaaatcccatactt 500
Query: 301 tctctaaagtgagataattactcttaaacatagagaactgttttatattatttgatgatg 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tctctaaagtgagataattactcttaaacatagaaaactgttttatattatttgatgatg 560
Query: 361 acacaaaatgatttgatgacacaaaatgatttgatttcagcctcatgtaaatatcatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 acacaaaatgatttgatgacacaaaatgatttgatttcagcctcatgtaaataccatgga 620
Query: 421 agatactttattgaaattgtgaattacagagtgagtccttggaacttgaagtattctagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 agatactttattgaaattgtgaattacagagtgagtccttggaacttgaagtattttagc 680
Query: 481 aagtattgaaa 491
|||||||||||
Sbjct: 681 aagtattgaaa 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|