BAC Information

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BAC

Clone NameMSMg01-337B11
Chromosome8 (Build37)
Map Location 5,011,257 - 5,030,371
singlet/doubletdoublet
Overlap genenone
Upstream geneEG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
Downstream geneLOC436026, Slc10a2, LOC434275, LOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337B11.T7 (MSMg01no337_b11.b1)MSMg01-337B11.TJ (MSMg01no337_b11.g1)
ACCAG451953AG451954
length748755
length of high quality
(start - end)
578 (46 - 623)491 (76 - 566)
definitionCHROMAT_FILE: MSMg01no337_b11.b1 PHD_FILE: MSMg01no337_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:21 2005CHROMAT_FILE: MSMg01no337_b11.g1 PHD_FILE: MSMg01no337_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,029,798 - 5,030,371)(5,011,257 - 5,011,747)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCACGATATTTAAAAGACACCAGAAATCACTGCTTTTAACATCA
TGGAATAGTTTTACATCTCCATGAAGCAGGATTTCTTTGCATCATTTAAT
ATAACGAGGAGTTTATACATTGGTGTAGTTCATATATTTACATTCCAAAC
CAAGACTTAAAAACTCAAAGCATAAGGAAAGGTTTATGTAAGTGAATCAA
TAAACAGTGAACCAGGTATTGAGAAAATAAAGTGATACTAACTTGTGAAC
TATACTTGGAACATATCCAAGACAAACCGTTTGAAGATAGAATCCTGTAG
TTCTGTAGTTGAGAAATTGGCACAAAAGGAATCATAGACCTACATAAAAC
AGATAAAATATCAAATGGTTAAGAAGAAAGTATTCACAATATTGAATTAA
GCAATGAATCTTCATTTTCTACAAAATGCTAAAGTGAACACCAAAGGGTA
AAAAGTATTTGCAGTTTTATAAGTATCATTAAGAAAATGAGTTCCTGGTA
AACTCAGGCTACAGAATAAGACATAGTTAAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAANAGAANAGA
ANAGAANAGAANAGAANAGAANAGAANAGANNAGANNAGAANAGAANAGA
ANAGAANAGAANAGAANAGAANAGAANAGAANAGAAATCAATTANGAA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTATGTACATTTTCTTTTCAGTT
CTCTTGGGTCCTACTTAGCCACTTGTTCTCTGTTCATGTCTTTGACTGTG
TGAGTTGAACTGGCATGTATAGTCATAAAGCATTCTATTCTAGAAAAACA
GCATGGAAGTGTTGATGGAATAGATTTAGACCCACTGTCATTGAGATCAT
GCTCTTAGAAGCATGTGTTATAAATTATGTGCATTTTGTATGTGGAAATG
TAATAACACATTAAAAACCCTTTATTTTTCTTTATTTTTAAACTTTAATT
TTTTAAAAAAGGAAATCCCATACTTTCTCTAAAGTGAGATAATTACTCTT
AAACATAGAGAACTGTTTTATATTATTTGATGATGACACAAAATGATTTG
ATGACACAAAATGATTTGATTTCAGCCTCATGTAAATATCATGGAAGATA
CTTTATTGAAATTGTGAATTACAGAGTGAGTCCTTGGAACTTGAAGTATT
CTAGCAAGTATTGAAATGGTTAGGTAGACAGGGTAAATGTAGACTCACAG
ACCACTTGCACGCCAGAGATATGGTCTCCCTAATAATCATGATAGGNTAT
TTCATCTCTTTTCCTCCATTGTATAAAAAGTGGCTATGAAAAAAACTTTT
TCTTCCCTTTTTTTCCCCTCACCTCTTGAAGGGGAATCTGGTAAAAAAAC
TCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_b11.b1 MSMg01no337_b11.b1 CHROMAT_FILE:
MSMg01no337_b11.b1 PHD_FILE: MSMg01no337_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:21 2005
         (578 letters)



>mm_chr8_5029638_5030615
          Length = 978

 Score = 1064 bits (550), Expect = 0.0
 Identities = 568/574 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcacgatatttaaaagacaccagaaatcactgcttttaacatcatggaatagt 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 734 gaattctgcacgatatttaaaagacactagaaatcactgcttttaacatcatggaatagt 675

                                                                       
Query: 65  tttacatctccatgaagcaggatttctttgcatcatttaatataacgaggagtttataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttacatctccatgaagcaggatttctttgcatcatttaatataacgaggagtttataca 615

                                                                       
Query: 125 ttggtgtagttcatatatttacattccaaaccaagacttaaaaactcaaagcataaggaa 184
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct: 614 ttggtgtagttcatatatttacattccaacccaagacttaaaaactcaaagcttaaagaa 555

                                                                       
Query: 185 aggtttatgtaagtgaatcaataaacagtgaaccaggtattgagaaaataaagtgatact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aggtttatgtaagtgaatcaataaacagtgaaccaggtattgagaaaataaagtgatact 495

                                                                       
Query: 245 aacttgtgaactatacttggaacatatccaagacaaaccgtttgaagatagaatcctgta 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 494 aacttgtgaactatacttggaacatatccaagacaaaccatttgaagatagaatcctgta 435

                                                                       
Query: 305 gttctgtagttgagaaattggcacaaaaggaatcatagacctacataaaacagataaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gttctgtagttgagaaattggcacaaaaggaatcatagacctacataaaacagataaaat 375

                                                                       
Query: 365 atcaaatggttaagaagaaagtattcacaatattgaattaagcaatgaatcttcattttc 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atcaaattgttaagaagaaagtattcacaatattgaattaagcaatgaatcttcattttc 315

                                                                       
Query: 425 tacaaaatgctaaagtgaacaccaaagggtaaaaagtatttgcagttttataagtatcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tacaaaatgctaaagtgaacaccaaagggtaaaaagtatttgcagttttataagtatcat 255

                                                                       
Query: 485 taagaaaatgagttcctggtaaactcaggctacagaataagacatagttaaaagaaagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taagaaaatgagttcctggtaaactcaggctacagaataagacatagttaaaagaaagaa 195

                                             
Query: 545 agaaagaaagaaagaaagaaagaaagaaagaaag 578
           ||||||||||||||||||||||||||||||||||
Sbjct: 194 agaaagaaagaaagaaagaaagaaagaaagaaag 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 21
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no337_b11.g1 MSMg01no337_b11.g1 CHROMAT_FILE:
MSMg01no337_b11.g1 PHD_FILE: MSMg01no337_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:21 2005
         (491 letters)



>mm_chr8_5011057_5011947
          Length = 891

 Score =  903 bits (467), Expect = 0.0
 Identities = 485/491 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctatgtacattttcttttcagttctcttgggtcctacttagccacttgttctctgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctatgtacattttcttttcagttctcttgggtcctacttagccacttgttctctgttc 260

                                                                       
Query: 61  atgtctttgactgtgtgagttgaactggcatgtatagtcataaagcattctattctagaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 atgtctttgactgtgtgagttgaactggcatatatagtcataaagcattctattctagaa 320

                                                                       
Query: 121 aaacagcatggaagtgttgatggaatagatttagacccactgtcattgagatcatgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aaacagcatggaagtgttgatggaatagatttagacccactgtcattgatatcatgctct 380

                                                                       
Query: 181 tagaagcatgtgttataaattatgtgcattttgtatgtggaaatgtaataacacattaaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tagaagcatgtgttataaattatgtgcatttcgtatgtggaaatgtaataacacattaaa 440

                                                                       
Query: 241 aaccctttatttttctttatttttaaactttaattttttaaaaaaggaaatcccatactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccctttatttttctttatttttaaactttaattttttaaaaaaggaaatcccatactt 500

                                                                       
Query: 301 tctctaaagtgagataattactcttaaacatagagaactgttttatattatttgatgatg 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tctctaaagtgagataattactcttaaacatagaaaactgttttatattatttgatgatg 560

                                                                       
Query: 361 acacaaaatgatttgatgacacaaaatgatttgatttcagcctcatgtaaatatcatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 acacaaaatgatttgatgacacaaaatgatttgatttcagcctcatgtaaataccatgga 620

                                                                       
Query: 421 agatactttattgaaattgtgaattacagagtgagtccttggaacttgaagtattctagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 agatactttattgaaattgtgaattacagagtgagtccttggaacttgaagtattttagc 680

                      
Query: 481 aagtattgaaa 491
           |||||||||||
Sbjct: 681 aagtattgaaa 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)