BAC Information

Click to search

BAC

Clone NameMSMg01-337B14
Chromosome8 (Build37)
Map Location 91,736,735 - 91,736,957
singlet/doubletsinglet
Overlap genenone
Upstream genePapd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337B14.T7 (MSMg01no337_b14.b1)MSMg01-337B14.TJ (MSMg01no337_b14.g1)
ACCAG451959AG451960
length678658
length of high quality
(start - end)
223 (70 - 292)88 (77 - 164)
definitionCHROMAT_FILE: MSMg01no337_b14.b1 PHD_FILE: MSMg01no337_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:22 2005CHROMAT_FILE: MSMg01no337_b14.g1 PHD_FILE: MSMg01no337_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGGTCCTCATGTCGCTAAACGACTCACTATTTTCAAAGAATGCGCGGAA
TTCTTCAAGACTGCCACATTGGAACTCATGGCCAACAGAACACAGAAGAA
ATGAAAAAGCACACCCCACTCCCTGGAGCCAGGAGTATCCTTGTTCTGAG
ACCTAATTCAGAAGGTGTTCTCAGGTGAGAAGTCAACACTGGAGCATTCC
CCAAGCCAATATCTGTTCTCTGCAGAGGTCAGGTACAGGGAAAGGTTCAT
TAGTCAGTGGCCATGTTAAGCAACCTTGCCTTTGGAGCTGTCNAGAACCA
GNAAAGGAAAAACCAAGGCCATGGGTTATTTTTTTGTTGGGNAAAAAAGG
GGGGAAACTTGAAAAAAACTAAGGGGGTCTCAAAAAATCTGAGAAAAAAT
TTTGGGGGGAAAAAGAAACCCCGGCCCAAACAAAATGTGGGGGTTGGTGA
AAAATCTCCTGGGGCGCGGGGGGGGGATTTTTTTGGGGAAAAAAAAAAAC
CTCCCTCCTGGGGGGGGGCCTAGAGGGTGTTTTCCCCCCCCCCCCTCCCT
TTTGGGGTCCCCCTGGGGGGGGGCCCCCTATGTGAAAATAATTTTTTTTC
TTCCCCCCCCCCCCCATATTTTTTTTGGTTTATAAAAACACCCCCTGCCG
CGGGGGTTAAACAATAAAAATATTTTTG
NNNNCCGATGACAAGNNTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAACTGCCTTATCTTGCAGG
TGTCAGNGNTTCTTTTCTTGTTTTTTTTTTTGTTTATTTGTTTGTTTTTG
TTTTATAAGAGAATTCATTATANNTTTCTCTAACCTTTTTGNNCCCANNA
AATCAATGGTGTGNCCCATTTAANCCCTGCCTTTAACAATTGAAAACAAA
AAATTAAACTTTTTGGCNAAAAAAAAAAAAAAAAAAAAAATAAACCCCCC
CCCCCCNCCCANAAANNNNAAAAAAAAAAAAAAAAANNNNCCCACCTCCC
CCCAAAAAAAAATACTTTNNCCTTCGTTATTTTTTCGCCATTCTCTNNNN
NNNNGGGGAGCTTGGGGGGAGTTTTTGGGGCGGGGGGGGACAAAANNNNN
AAAAAAAAANTTAATTTAATGATTTTTCGTGTTGTTTGTGGGTTGTGTGT
GTGTTGTGGTTTGGTTGGTGTGGTTGGGGTGGTGGGTTGTTGGGGGGGGG
GCGANNNNNNNNNNANAAANANNAAANANNNNNANAAAAANANCCANANN
NAAAAAAAAAAAANAAAAAAAAAANANANNAAAAAAAAAAAAAAAAAAAA
AATAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_b14.b1 MSMg01no337_b14.b1 CHROMAT_FILE:
MSMg01no337_b14.b1 PHD_FILE: MSMg01no337_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:22 2005
         (223 letters)



>mm_chr8_91736535_91737157
          Length = 623

 Score =  431 bits (223), Expect = e-125
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaactcatggccaacagaacacagaagaaatgaaaaagcacaccccactccctggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tggaactcatggccaacagaacacagaagaaatgaaaaagcacaccccactccctggagc 364

                                                                       
Query: 61  caggagtatccttgttctgagacctaattcagaaggtgttctcaggtgagaagtcaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caggagtatccttgttctgagacctaattcagaaggtgttctcaggtgagaagtcaacac 304

                                                                       
Query: 121 tggagcattccccaagccaatatctgttctctgcagaggtcaggtacagggaaaggttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tggagcattccccaagccaatatctgttctctgcagaggtcaggtacagggaaaggttca 244

                                                      
Query: 181 ttagtcagtggccatgttaagcaaccttgcctttggagctgtc 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttagtcagtggccatgttaagcaaccttgcctttggagctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)