BAC Information

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BAC

Clone NameMSMg01-337F24
Chromosome8 (Build37)
Map Location 48,515,295 - 48,624,553
singlet/doubletdoublet
Overlap gene4930448N21Rik, D030016E14Rik, Rwdd4a
Upstream geneLOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2
Downstream geneLOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337F24.T7 (MSMg01no337_f24.b1)MSMg01-337F24.TJ (MSMg01no337_f24.g1)
ACCAG452165AG452166
length773785
length of high quality
(start - end)		509 (41 - 549)470 (68 - 537)
definitionCHROMAT_FILE: MSMg01no337_f24.b1 PHD_FILE: MSMg01no337_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:44 2005CHROMAT_FILE: MSMg01no337_f24.g1 PHD_FILE: MSMg01no337_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,515,295 - 48,515,799)(48,624,226 - 48,624,553)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATACATGAATTCATGTGCCCACAGAAATCAAAAGGCTATGTCAGATACCC
CGGAGCTGGAGTAACAGGCCATTGTGAGTGGCCTGACATAGGTGCATAGG
AACTGAACTCTGGTTTTATGCAAGAACAGCAAGTGTGCTTAACGGCTGAG
CCATCTCTCTAGTCGCTGGACAAATAAGCATCTGTTTTTCTTATGAATTA
TGTTTCTTATAGAAGAAGAATTATGTGTCTGCAGAGGACTACAGGCAAGA
GTGTCACTCTCCACGCAGGAGTCTAGTGCTTTTGACTGCAAAGCAGTTTC
TCTGGGGACTGTTCTCCTAACTCCTAGAACTCAACCTCAGAGCTTTGTGG
TCCATTCTGTAAATCACTGAGTCCCTCCTAACCCTTGTGAGTCCATCCTA
ACCATTCCCGGGTCTAAAAGTAAAGAACAATGAGCTAAAAGCTCAAGAAA
CTCCAAAACTCACTTGGTCATCATATTGATATAAATCCAAACTTATTGGN
TGTTTGATTGTTTGGGTGGGGTTTTTAGTTTTGGTTTTGTTGGGGGGNNA
GAAGTTGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTNNNNNNNNNNNNNNN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGAGCCTCTTTGGGAAAGAAAAGGTAACGGT
GGTTAGGGAGATCTGAGAAGGCAGCTAGACTTAAAATGGAAGGGCCGGGG
TCTTAAGTCCAGCATGACCTCTGGTCAGTAAGAGTTCCCCGATATAACTT
GATGGGATTTAGAATCAGCCCAGAAACAAACCTCTGGGCATGTCTGTGAG
GGCTTTGCTGGGCTACGTTAACTGAGGTAGGAAGACCTATGCTAATGTGG
ACACCATTCTGTGGGCTGAGCCATTCCCCATGTCAGGAGAGAGCGAGAAC
TGGGCACAAGTGTCCTTTTTCTCTGCTTCCGGACTTTGGGTACAATATGA
CCGCAGCCTCACACAGGATCCTACTGCCTCAACTTCCCTGCCACTGATAA
CCTGGACCTTTCAAACTGGGAGCCAAAACGGTCTTCCTTCCTTTTTAAAA
AAAAATATTTATTTATTATTATTTATTATTACTGGATATATGTGATTTGT
GTAGAGGAACAAAAGTCCCACGGTGCACAGAGGACAACTTCNAGGACTGA
GAATCGGTTTTATCAACCCCCCCTTTGTGTGTATTCCTGGGAACCAGCTC
ANGCTTTTTGGGCTGGAGAAAGGAAGGTTTTTTGTTCTTCGGCCCCTCAC
GAATTTGGTCCCAGCAAAAAACATGGTTTCCCCAATAAAGCCGGGAAAAA
GGCCCCGGGCTTTTAAGGGGAACTGGGCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_f24.b1 MSMg01no337_f24.b1 CHROMAT_FILE:
MSMg01no337_f24.b1 PHD_FILE: MSMg01no337_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:44 2005
         (509 letters)



>mm_chr8_48515091_48515999
          Length = 909

 Score =  907 bits (469), Expect = 0.0
 Identities = 496/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatacatgaattcatgtgcccacagaaatcaaaaggctatgtcagataccccgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacatgaattcatgtgcccacagaaatcaaaaggctatgtcagataccccgga 264

                                                                       
Query: 65  gctggagtaacaggccattgtgagtggcctgacataggtgcataggaactgaactctggt 124
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 gctggagtaaaaggccattgtgagtggcctgacataggtgcgtaggaactgaactctggt 324

                                                                       
Query: 125 tttatgcaagaacagcaagtgtgcttaacggctgagccatctctctagtcgctggacaaa 184
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tttctgcaagaacagcaagtgtgcttaactgctgagccatctctctagtcgctggacaaa 384

                                                                       
Query: 185 taagcatctgtttttcttatgaattatgtttcttatagaagaagaattatgtgtctgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagcatctgtttttcttatgaattatgtttcttatagaagaagaattatgtgtctgcag 444

                                                                       
Query: 245 aggactacaggcaagagtgtcactctccacgcaggagtctagtgcttttgactgcaaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 aggactacaggcaagagtgtcactctccacgcaggagtctagtgcttttgactgcaaggc 504

                                                                       
Query: 305 agtttctctggggactgttctcctaactcctagaactcaacctcagagctttgtggtcca 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttctctggggactggtctcctaactcctagaactcaacctcagagctttgtggtcca 564

                                                                       
Query: 365 ttctgtaaatcactgagtccctcctaacccttgtgagtccatcctaaccattcccgggtc 424
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 ttctgtaaagcactgagtccctcctaacctttgtgagtccatcctaaccattcccgggtc 624

                                                                       
Query: 425 taaaagtaaagaacaatgagctaaaagctcaagaaactccaaaactcacttggtcatcat 484
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaagtaaagaacaatgagctgaaagctcaagaaactccaaaactcacttggtcatcat 684

                                    
Query: 485 attgatataaatccaaacttattgg 509
           |||||||||||||||||||||||||
Sbjct: 685 attgatataaatccaaacttattgg 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_f24.g1 MSMg01no337_f24.g1 CHROMAT_FILE:
MSMg01no337_f24.g1 PHD_FILE: MSMg01no337_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:44 2005
         (470 letters)



>mm_chr8_48624226_48625095
          Length = 870

 Score =  596 bits (308), Expect = e-174
 Identities = 323/328 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagcctctttgggaaagaaaaggtaacggtggttagggagatctgagaaggcagcta 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 328 tcagagcctctttgggaaagaaaaggtaacggtggttggggagatctgagaaggcagctg 269

                                                                       
Query: 61  gacttaaaatggaagggccggggtcttaagtccagcatgacctctggtcagtaagagttc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gacttaaaatggaagggcctgggtcttaagtccagcatgacctctggtcagtaagagttc 209

                                                                       
Query: 121 cccgatataacttgatgggatttagaatcagcccagaaacaaacctctgggcatgtctgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 208 cccgatataacttgatgggatttagaatcagcccagaaacaaacctctgggcttgtctgt 149

                                                                       
Query: 181 gagggctttgctgggctacgttaactgaggtaggaagacctatgctaatgtggacaccat 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gagggctttgctggactacgttaactgaggtaggaagacctatgctaatgtggacaccat 89

                                                                       
Query: 241 tctgtgggctgagccattccccatgtcaggagagagcgagaactgggcacaagtgtcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tctgtgggctgagccattccccatgtcaggagagagcgagaactgggcacaagtgtcctt 29

                                       
Query: 301 tttctctgcttccggactttgggtacaa 328
           ||||||||||||||||||||||||||||
Sbjct: 28  tttctctgcttccggactttgggtacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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