BAC Information

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BAC

Clone NameMSMg01-337H17
Chromosome8 (Build37)
Map Location 32,769,428 - 32,769,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
Downstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337H17.T7 (MSMg01no337_h17.b1)MSMg01-337H17.TJ (MSMg01no337_h17.g1)
ACCAG452247AG452248
length818778
length of high quality
(start - end)
---507 (69 - 575)
definitionCHROMAT_FILE: MSMg01no337_h17.b1 PHD_FILE: MSMg01no337_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:52 2005CHROMAT_FILE: MSMg01no337_h17.g1 PHD_FILE: MSMg01no337_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGACCATCCGCGGAATTCAAT
TTATTTTCCGTAGACCTGCCTCTCTGTAAAGACCACTNGGATATGAAGTG
ATGATTTAAAACTTCACCCAAGTGCAAAGCTGATTGGGGTGGAGGGTGGT
GAATGCAGGCACCCCCCCCCGCCCCCCCCCCCCTCCCCTCTCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCTCTCCCCTCTCCCTCCCCTCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCC
CCCCCCCCCCCTCCCTCTTTTTTCCCCCCCCCCCCCTCCCCCCTCCCCCC
CTCCCCCCTTCCTCCCTCCCCTCTCTCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTTTCCCCCCCTCTCTCCCCCCCCCCTCTCTTTCCCCCCCCCCT
CCCCCCCCCCTCCCCTCCCCCCCCCCCCCCCTTCCCCTCCTTTTCCTCCT
CCCCCCCCCCCTCCCCCTCCCCCCTCCCCCCCCCCCCTTCTCCCCTCCCC
CCCCCTCCCCCCCCCCCCCCCCCCCCTCCTTCCTCCCCCCCCCCCCTCTC
CTTCCCCCCCTCTCCCCCTCCCCCCCCCTCCCTCCCCCCCCTCCCCCTCT
CCCCCCTCCTCCTTTCCCCCCCCTCCTCCTCCTCCCCCCCCCCCCCCTCC
CCCCCCCCTCTCCTTCTCCCCTCCTTCCCCCCCTCTCCTCCTCCCCCCTT
CTCCTCCCTCCCCCCTCCCTCCTCTCTCCCCCCCACTCTTTCTCCCCCTC
CCCCTCTCTCCCTCCTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAATCCAGAAACAAACAAACAAACAAAACA
AGGTTACAGTTAACCTGCTCACCATCTTCTCTTTAAGTAGATAAGTAAAC
ATTCAACCCAGAGCTACCTACTCTAGAGGAAAGGAATATATTCATACATG
AGCAAAAGAGAATCTGAGAAGATTCTGTCTGACAAAACTCCTCCACTTTA
TCTCCATGTTTGTCTAGTTGTTCTTACCCAAAAATATGTACTTCTAACAA
ACACAGCATGAAAATACACAGGCTTACATACATGCTGGTGTCTCATTTTT
TGGTGGAGGGTTTTAGATTTTGTAAAACTCTATGCTTACATTGGTTACTT
TCTGTTGTTATGAAATATACCAACAGCAACTTAAAGGAAAAATGGGTTTA
TTTTAGCTTACCATTCCAGAGAGATAGAGTTCATCATGATAGAGCAGGCA
CAGCAACAGGCAGGGGAAGCATGGGGGCAGGAACAGGAAGTTGGCTGACC
ACAGTTCCTCCACACACGAAGCCCTGAGGGAGGAGGGAACAAACAAGAAG
GGGAGTAAGGCTATATTATCTCAGATTACACCCCAAAGGTCCTATGGCAT
CCCGCAAGGCTCAACTTCCTAAGGGTCTATTACCTCCCCCTAGATTGGAT
TAGGCAGGGACCCGTATTCCGGGACTGTGCCCATTAAAAAAAATTTTTCT
TTCTACCCCGTTTTGTCTTATTGGATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_h17.g1 MSMg01no337_h17.g1 CHROMAT_FILE:
MSMg01no337_h17.g1 PHD_FILE: MSMg01no337_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:52 2005
         (507 letters)



>mm_chr8_32769228_32770134
          Length = 907

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaatccagaaacaaacaaacaaacaaaacaaggttacagttaacctgctcaccatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaatccagaaacaaacaaacaaacaaaacaaggttacagttaacctgctcaccatctt 260

                                                                       
Query: 61  ctctttaagtagataagtaaacattcaacccagagctacctactctagaggaaaggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctttaagtagataagtaaacattcaacccagagctacctactctagaggaaaggaata 320

                                                                       
Query: 121 tattcatacatgagcaaaagagaatctgagaagattctgtctgacaaaactcctccactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcatacatgagcaaaagagaatctgagaagattctgtctgacaaaactcctccactt 380

                                                                       
Query: 181 tatctccatgtttgtctagttgttcttacccaaaaatatgtacttctaacaaacacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctccatgtttgtctagttgttcttacccaaaaatatgtacttctaacaaacacagca 440

                                                                       
Query: 241 tgaaaatacacaggcttacatacatgctggtgtctcattttttggtggagggttttagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaatacacaggcttacatacatgctggtgtctcattttttggtggagggttttagat 500

                                                                       
Query: 301 tttgtaaaactctatgcttacattggttactttctgttgttatgaaatataccaacagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtaaaactctatgcttacattggttactttctgttgttatgaaatataccaacagca 560

                                                                       
Query: 361 acttaaaggaaaaatgggtttattttagcttaccattccagagagatagagttcatcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttaaaggaaaaatgggtttattttagcttaccattccagagagatagagttcatcatg 620

                                                                       
Query: 421 atagagcaggcacagcaacaggcaggggaagcatgggggcaggaacaggaagttggctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagagcaggcacagcaacaggcaggggaagcatgggggcaggaacaggaagttggctga 680

                                      
Query: 481 ccacagttcctccacacacgaagccct 507
           |||||||||||||||||||||||||||
Sbjct: 681 ccacagttcctccacacacgaagccct 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)