Query= MSMg01no337_i06.b1 MSMg01no337_i06.b1 CHROMAT_FILE:
MSMg01no337_i06.b1 PHD_FILE: MSMg01no337_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:55 2005
(530 letters)
>mm_chr8_85961892_85962822
Length = 931
Score = 1004 bits (519), Expect = 0.0
Identities = 525/527 (99%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcgtgattttc-aatactattaataggttgaataactttaaaaatagaattaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattcttcgtgattttcaaatactattaataggttgaataactttaaaaatagaattaa 672
Query: 64 aacaaacaaataaacaaaaccctggtaatttactttctctgaaggacagagactgtaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aacaaacaaataaacaaaaccctggtaatttactttctctgaaggacagagactgtaaac 612
Query: 124 tgaggtagaaagtgtgagagagcaggctcctgtgcactgggtagtgtgtttaactttaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgaggtagaaagtgtgagagagcaggctcctgtgcactgggtagtgtgtttaactttaca 552
Query: 184 gttgttcagtagtgctatgtaaggatgctcaatagctttcagagagagctgcctgagagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gttgttcagtagtgctatgtaaggatgctcaatagctttcagagagagctgcctgagagt 492
Query: 244 ccactttcatatttgtaccctgggcattctttctcatgaagacttttatgtgtgtacctt 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 491 ccactttcatatttgtaccctgggcattctttctcaggaagacttttatgtgtgtacctt 432
Query: 304 tgcttctctttgtaattgtccttaaaagatttacaatgtttctgaatacttctttaaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgcttctctttgtaattgtccttaaaagatttacaatgtttctgaatacttctttaaaag 372
Query: 364 tattatcctaatttcccaagattgcagttaagatgtttcctgttttgagtatttgcattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tattatcctaatttcccaagattgcagttaagatgtttcctgttttgagtatttgcattt 312
Query: 424 ccatctccctttgctagcacatgccacatgatataagtgcagcatttaacgtcagagtct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccatctccctttgctagcacatgccacatgatataagtgcagcatttaacgtcagagtct 252
Query: 484 tgattactgagcagctcagcagcatctgtccttatgcttctctctgg 530
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgattactgagcagctcagcagcatctgtccttatgcttctctctgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_i06.g1 MSMg01no337_i06.g1 CHROMAT_FILE:
MSMg01no337_i06.g1 PHD_FILE: MSMg01no337_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:55 2005
(405 letters)
>mm_chr8_85763181_85763985
Length = 805
Score = 775 bits (401), Expect = 0.0
Identities = 404/405 (99%)
Strand = Plus / Plus
Query: 1 cttttcaatctcaagcttgtcatgactggcatcctgggccagttattgctgcagagctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttcaatctcaagcttgtcatgactggcatcctgggccagttattgctgcagagctgt 260
Query: 61 gctcagcaagatgtctggcagcatcagagtaggcagctgtcacttctccaccagtgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcagcaagatgtctggcagcatcagagtaggcagctgtcacttctccaccagtgacaa 320
Query: 121 acaaatatgcctctggttgctgggaaatgtcccctagtttggaaaaacccagaaagatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatatgcctctggttgctgggaaatgtcccctagtttggaaaaacccagaaagatca 380
Query: 181 ttttattttctgtttagagtctccagtttgatttgtgttggaaggttgtccttttgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttattttctgtttagagtctccagtttgatttgtgttggaaggttgtccttttgtctg 440
Query: 241 agacatggatggcttcccccagggacttgggatttgagctccttgctccttcagcagggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacatggatggcttcccccagggacttgggatttgagctccttgctccttcagcagggg 500
Query: 301 ctgccttcccagtcctcccacaaggtgcccctgcttcctctttccccaggtaaccatcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgccttcccagtcctcccacaaggtgcccctgcttcctctttccccaggtaaccatcgt 560
Query: 361 ggagaaggtcgacagctgcagtgtgctccccagccctctgtccat 405
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagaaggccgacagctgcagtgtgctccccagccctctgtccat 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
