Query= MSMg01no338_m08.b1 MSMg01no338_m08.b1 CHROMAT_FILE:
MSMg01no338_m08.b1 PHD_FILE: MSMg01no338_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:28 2005
(689 letters)
>mm_chr8_101650304_101651391
Length = 1088
Score = 1263 bits (653), Expect = 0.0
Identities = 677/685 (98%), Gaps = 1/685 (0%)
Strand = Plus / Plus
Query: 5 gaattctatatttctcaaccagtagaacaagatatatacaacatgttgatttaaataaac 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatattcctgaaccagtagaacaagatatatacaacatgttgatttaaataaac 264
Query: 65 acacataattcaaaataaatgattagcagaggtggctgagataactgcagtgcaagccac 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacacaattcaaaataaatgattagcagaggtggctgagataactgcagtgcaagccac 324
Query: 125 tacctcagcaacatgtgcagaacaaaatggatactgttgatttattaacagatggttgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacctcagcaacatgtgcagaacaaaatggatactgttgatttattaacagatggttgta 384
Query: 185 tcaaatgggttgaatataactaaatgtaaacatagataaagatgcagatatctttgtaca 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaatggattgaatataactaaatgtaaacatagataaagatgcagatatctttgtaca 444
Query: 245 gcagttcttctcccaagccatctgtttatgtacattaaaaagaaatcaaagtagaatact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagttcttctcccaagccatctgtttatgtacattaaaaagaaatcaaagtagaatact 504
Query: 305 gcgtatctttgtaacgcaatttaaaatgaaatattgagtaaaatatgcaaagctataagt 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcgtatctttgtcacgcaatttaaaatgaaatattgagtaaaatatgcaaagctataagt 564
Query: 365 tatggatagtattttttaatatacttgcaatgacaataaaaatgtctacagatgatgata 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 tatggatagtattttttaatatacttgcaatgacaataaaa-tgtctacagatgatgata 623
Query: 425 ttgttttgtttagaatgtttgtatttattttcatagcattttagttgtatctaaaatata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgttttgtttagaatgtttgtatttattttcatagcattttagttgtatctaaaatata 683
Query: 485 gatgttagctgcacattccttacctagctgatggaagaaaatttactaaactaaccttga 544
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 gatgttagctgcacattccttacctacctgatggaagaaaatttactaaactaaccttga 743
Query: 545 aacaggataccagtacaggttggttttgcctatcaacctgatacaagctggagctgtcta 604
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacaggataccagtacaggctggttttgcctatcaacctgatacaagctggagctgtcta 803
Query: 605 agagaaaggagccttcattgaaaaaatgcccccaggagatccagctgtaaggcattttct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agagaaaggagccttcattgaaaaaatgcccccaggagatccagctgtaaggcattttct 863
Query: 665 caattcgtgatcaaggaggaagggc 689
|||||||||||||||||||||||||
Sbjct: 864 caattcgtgatcaaggaggaagggc 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_m08.g1 MSMg01no338_m08.g1 CHROMAT_FILE:
MSMg01no338_m08.g1 PHD_FILE: MSMg01no338_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:29 2005
(664 letters)
>mm_chr8_101691682_101692744
Length = 1063
Score = 913 bits (472), Expect = 0.0
Identities = 552/586 (94%), Gaps = 17/586 (2%)
Strand = Plus / Minus
Query: 91 aacagatgttctgggccaatgagctattaacttcaggaagacaagagtaccaacccccca 150
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1063 aacagatgttctgggccaatgagctattaacttcaggaagacaagagtaccaaaccccca 1004
Query: 151 tcagggaagacgcgggtcggtttcttacttcaggaatcattgaatctgtcactcatagca 210
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 tcagggaagacgtgggtcggtttcttacttcaggaatcattgaatctgtcactcatagca 944
Query: 211 cccatatattcagtgt-ggatacttcagggaataaagccacccaaacctctgcccagctt 269
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 cccatatatttagtgtcgg-tacttcagggaataaagccacccaaacctctgcccagctt 885
Query: 270 tc--------ccccccttaggcctggaagcaccaactgtgaatcagtttaccaggttggg 321
| |||||| || |||||||||||| |||||||||||| |||| |||||||
Sbjct: 884 cccaccaccacccccccaagccctggaagcacctcctgtgaatcagtataccgggttggg 825
Query: 322 ttgatccatagagaggtagaggggtgagaaaaaccatgagtgcatgcaacacaatctgtt 381
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 824 ttgatccatagagaggtagaggggtgagaaaaaccatgagtgcctgcaacacaatctgtt 765
Query: 382 ttattttacagaggaaaaa--aaaaaaaacctcaaaagaaattcacttgatgaacatagg 439
|||||||| ||||| | |||||||||||||||||| |||||||||| |||||||||
Sbjct: 764 ttattttagagagg----aggaaaaaaaacctcaaaagagattcacttgacgaacatagg 709
Query: 440 atgctagt-aaaaaacattatgtaataaaaatgaaacatagcctttcctgtaatagttac 498
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atgctagtaaaaaaacattatgtaataaaaatgaaacatagcctttcctgtaatagttac 649
Query: 499 atagttgtttaggattatcatcatttttattataagtataagaaaatcaaaccataaaag 558
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atagctgcttaggattatcatcatttttattataagtataagaaaatcaaaccataaaag 589
Query: 559 aagattgacagaataatcatttttgtaatgtattttcatagtaatgacttggatttctgt 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aagattgacagaataatcatttttgtaatgtattttcatagtaatgacttggatttctgt 529
Query: 619 ctgacgagatctgtccagttggtttcacagcgaggaaaagcacagg 664
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctgacgagatctgtccagttggtttcacagcgaggaaaagcacagg 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
