BAC Information

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BAC

Clone NameMSMg01-338M16
Chromosome8 (Build37)
Map Location 23,746,818 - 23,747,404
singlet/doubletsinglet
Overlap genePolb
Upstream geneDefcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4
Downstream geneIkbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338M16.T7 (MSMg01no338_m16.b1)MSMg01-338M16.TJ (MSMg01no338_m16.g1)
ACCAG453235AG453236
length733857
length of high quality
(start - end)		583 (66 - 648)97 (68 - 164)
definitionCHROMAT_FILE: MSMg01no338_m16.b1 PHD_FILE: MSMg01no338_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:30 2005CHROMAT_FILE: MSMg01no338_m16.g1 PHD_FILE: MSMg01no338_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTACTTTCCCCGAGCAGGGCTTGAACTCATGGCAACCTTCCTGCTTCAAC
CTGAGTGCTGGGTTAACATCTCAGGCCAAAGGCCACAGAACTCTGACAGT
TGAGCAGAGTGGATTTTATAAAGTCTCTGCAAGTGCCCTTTTGTAGGCTC
CCAGCACAAGGTTTTCCCCAGTGTGTCCTGTCATGAACCTAACTAAATCC
CCTTTCTCCCTTCTGTAACCGATGTAACAGATTACTAATCAGGCTTGGCG
ATGCTTTTCTTTATTTTTCTTTTCCTTCCTTTCTTTTTTTCTTTTTTTTT
TTTGAGATGGGTTTTCCCACCTGGAACTCATTAGGCATTTCGAACCTCAC
TCATTAAAAGTCTTCTGAGTCAGAGAATATGAAACCACTTGATATTTTAG
AAAAGAATTTACTTCGAGCCTGTTATTATTAATAGTTTTAAAGAGCAAAT
TCTGCCTAATTATTTTGGTGATTCAAATTATTAACAAAGTGTTTACAAGA
AAATCCTTTAGTAAACTATTCTGAGGGTAGCTCTGCGAGTGGAGACACGG
TGATAATCACTTTCCTGGCTCTTGGAGCTCTGCTAGTCCTTTTGTACTGC
TGTCTGAGGCAGGGGCTCGCTCTCAGCAGCTCTGGCTGTCCTGGTGTTCT
GCCTGTGCCACCATGCTCTGCCCTGCTAGCTGA

AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCACCATGTCCTGCTAACTCAAGGCTCTCTAG
ATGTCAAGTTAAATGCAGAGCAAAAGTACATCACTGGTACATGTTCCCAC
CCTCTTCCTCCCAAGGTCCATCAGCNTGCATCATGGGAAGCTCCTGCTCA
CAGGAAAGGACAGAACNTCAGGTGCTAAAGAACTTGTCCCCTTATCTCTA
TTCTAAACTTTGGAATGTGCTGCCTGCCNACCCCTGGAAAAAAAATTGGC
CCAAAAACTATNAAAAAAATTTGCCTTTAAACACNNNTCCTGTGGAAAAA
AAACCTATNANCAAAGTGTTTTTGAATGGACCCCCCTTGGCCNAAAAAAA
AANNGNTTGCACCGGGGAAAATTAATTCCCCTCTTGCCCAAAAAAAAAAA
AAACACAATGGTATTTCTCCCCCATAACTTTAAGGTNTTTGAATAATAAA
AAAAAAAAAAAAACCCCTCTCTCTTTTTTTTTTTTTAAAAAAAAAAAAAC
TTTTTTTAAAAAAAAAACCCCCCCCTTCTTCTTGATGGGGTGCGGCCCCA
CAAACAAAAAAAAAAGAGGAAGAAAAAACTGNANNNNAAAAAAAAGAAAA
ACATCACTTCTGGNNTANTTTCCTCTCNCCCCTCTCGCTCTTCTCCCTTT
TTNNNTTCTCTCTTTTTTTTCTTCCTTACATCCATACTTCTTTCCCTTCT
TTTCTCTTCCCTCCCCCCCTNCCTACTACATTTACTTATCCCAATTTCCT
TCTTCTTATTAACTAACATACTACTTACCAGCTTGTAGTATGATTATTAT
AATATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_m16.b1 MSMg01no338_m16.b1 CHROMAT_FILE:
MSMg01no338_m16.b1 PHD_FILE: MSMg01no338_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:30 2005
         (583 letters)



>mm_chr8_23746622_23747604
          Length = 983

 Score = 1067 bits (552), Expect = 0.0
 Identities = 577/588 (98%), Gaps = 6/588 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcttgaactcatggcaaccttcctgcttcaacctgagtgctgggttaacatctcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agggcttgaactcatggcaaccttcctgcttcaacctgagtgctgggttaacatctcagg 256

                                                                       
Query: 61  ccaaaggccacagaactctgacagttgagcagagtggattttataaagtctctgcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccaaaggccacagaactctgacagttgagcagagtggattttataaagtctctgcaagtg 316

                                                                       
Query: 121 cccttttgtaggctcccagcacaaggttttccccagtgtgtcctgtcatgaacctaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cccttttgtaggctcccagcacaaggttttccccagtgtgtcctgtcatgaacctaacta 376

                                                                       
Query: 181 aatcccctttctcccttctgtaaccgatgtaacagattactaatcaggcttggcgatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatcccctttctcccttctgtaaccgatgtaacagattactaatcaggcttggcgatgct 436

                                                                       
Query: 241 tttctttatttttcttttccttcctttctttttttc-----ttttttttttttgagatgg 295
           |||| |||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 437 tttc-ttatttttcttttccttcctttctttttttctttttttttttttttttgagatgg 495

                                                                       
Query: 296 gttttcccacctggaactcattaggcatttcgaacctcactcattaaaagtcttctgagt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gttttcccacctggaactcattaggcatttcgaacctcactcattaaaagtcttctgagt 555

                                                                       
Query: 356 cagagaatatgaaaccacttgatattttagaaaagaatttacttcgagcctgttattatt 415
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 cagagaatatgaaaccacttgatattttaggaaagaatttacttcgagcctgttattatt 615

                                                                       
Query: 416 aatagttttaaagagcaaattctgcctaattattttggtgattcaaattattaacaaagt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatagttttaaagagcaaattctgcctaattattttggtgattcaaattattaacaaagt 675

                                                                       
Query: 476 gtttacaagaaaatcctttagtaaactattctgagggtagctctgcgagtggagacacgg 535
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtttacaagaaaatcttttagtaaactattctgagggtagctctgcgagtggagacacgg 735

                                                           
Query: 536 tgataatcactttcctggctcttggagctctgctagtccttttgtact 583
           ||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 736 tgataatcactttcccgcctcttggagctctgctaatccttttgtact 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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