XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GCCCTGTCACTCTCTACCCTGGAAATGGAGATGGAGAGCTCAGACCCATA
AACTGTCTGCACATCAGAGTGACTTTCAGAGTCATAAACTTTAAAGTGGG
CTTGCCAAGAGTGGAGCCCTTCCTTGGGCTCAACTCATTTGCTAAGATGG
CTCTTAGAGCCCTGGGCAGCATTGTGTTAACAAGTGAAGAGGTGTATAGA
GCGAGGCATGTAGGTGGCCCACTCTCTAGAAACCTCCATGTATCTAGCTC
TCTGAAGCTCTCTAATACAGCCCTTCTGTGTCTTTATGGAAACCTCACCA
CTATGTAGGCATGATTGACAAGATCATTAGCCATGGATGACCAATCTAAT
GTTCAAGTCATTTTTCTTTTGCATAGTTGGTGGGTAGGCTGAAGGATCAA
CCCACAAATCATGACTTAGTCATTCCTATGACAAGGCTACATACATCCTG
AAGTGACCTAGTGATGGCTAGGCACCAGTCAGCTCATTAGCATACAAATA
GACATTCCCTGGGGAGAGGCCAAGGATTTTAATAGCCACGGGCCTGGGAA
ACTGGGAAGAAGACCAAATACGCATGTTACAACAATACAAAGGAATTAAA
GGTAAGTTTCATAAATGTGAAGTGTGACCATGTCTTTAATAACCTATGCA
TGTATCTGTTGTAGATTCTTGTGGGATACTGCCTAATGGCTTGAGCAAAN

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGTGCAACCTCCTGTCATGCCTAGCAAAT
ACTGTTAGCTACAGATATGTGTTCCCTCTGGCTCTTACAATATTCCCAGC
CCCTCTTCTATGGTGACCCATGACCCCTGGAGAAATGAAATGTGATATAG
ATGTCCCATTTAGAGCTGAGAAGGAAGCATCTTCTACAAAGGATGCCAGG
GAAACCACATGCAGAAGAGTGAAACTACATCTTCACTGCTCATGTTGCGA
AAACCTCCAAATGGATGGAGCACATCAACATTAGATCACCAAGATCACGT
TCAGTGAATCTGATGGAAGAGCACATAGGGAAGACACTTGGACTTATAGG
CACACGGAAGGACTTTCTGAAGAAGACCCTATAACACAGACATTAAGACC
AACAATTGACCCCAGGAAACTAAAAATCTTATGTACAGCAAAGGACACCA
TCATTAGAGTAAAAGTGTATCCTCCAGAATGGAAAAACAATCTTTATGTA
CTATATATCTAACAGAGGGTTGGTATATATCATAAACAAAGAGCTAAAGA
AAAAAGAAGGAAACAAGTAACCCTATTAAGATGCGAACTGTCAAGCTAAA
TAAGAGTTCTCAAATAAAGATACACAAATCAAGAACCACATTTTGAAGAT
GAGATTTCTTCTCCCTGCCCCAGNAATGATTCTTTCTTATG

Query= MSMg01no338_o16.b1 MSMg01no338_o16.b1 CHROMAT_FILE:
MSMg01no338_o16.b1 PHD_FILE: MSMg01no338_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:39 2005
         (616 letters)



>mm_chr8_8920972_8921987
          Length = 1016

 Score = 1152 bits (596), Expect = 0.0
 Identities = 608/612 (99%), Gaps = 1/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccctgtcactctctaccctggaaatggagatggagagctcagacccataaac 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccctggcactctctaccctggaaatggagatggagagctcagacccataaac 264

                                                                       
Query: 65  tgtctgcacatcagagtgactttcagagtcataaactttaaagtgggcttgccaagagtg 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtctgcacatcagagtgactttctgagtcataaactttaaagtgggcttgccaagagtg 324

                                                                       
Query: 125 gagcccttccttgggctcaactcatttgctaagatggctcttagagccctgggcagcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcccttccttgggctcaactcatttgctaagatggctcttagagccctgggcagcatt 384

                                                                       
Query: 185 gtgttaacaagtgaagaggtgtatagagcgaggcatgtaggtggcccactctctagaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgttaacaagtgaagaggtgtatagagcgaggcatgtaggtggcccactctctagaaac 444

                                                                       
Query: 245 ctccatgtatctagctctctgaagctctctaatacagcccttctgtgtctttatggaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctccatgtatctagctctctgaagctctctaatacagcccttctgtgtctttatggaaac 504

                                                                       
Query: 305 ctcaccactatgtaggcatgattgacaagatcattagccatggatgaccaatctaatgtt 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 ctcaccactatgtaggcatgattgacaa-atcattagccatggatgaccaatctaatgtt 563

                                                                       
Query: 365 caagtcatttttcttttgcatagttggtgggtaggctgaaggatcaacccacaaatcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caagtcatttttcttttgcatagttggtgggtaggctgaaggatcaacccacaaatcatg 623

                                                                       
Query: 425 acttagtcattcctatgacaaggctacatacatcctgaagtgacctagtgatggctaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acttagtcattcctatgacaaggctacatacatcctgaagtgacctagtgatggctaggc 683

                                                                       
Query: 485 accagtcagctcattagcatacaaatagacattccctggggagaggccaaggattttaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accagtcagctcattagcatacaaatagacattccctggggagaggccaaggattttaat 743

                                                                       
Query: 545 agccacgggcctgggaaactgggaagaagaccaaatacgcatgttacaacaatacaaagg 604
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 744 agccacgggcctgggaaactgggaagaagaccaaatacacatgttacaacaatacaaagg 803

                       
Query: 605 aattaaaggtaa 616
           ||||||||||||
Sbjct: 804 aattaaaggtaa 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)