Query= MSMg01no339_a19.b1 MSMg01no339_a19.b1 CHROMAT_FILE:
MSMg01no339_a19.b1 PHD_FILE: MSMg01no339_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:49 2005
(527 letters)
>mm_chr8_101464981_101465905
Length = 925
Score = 735 bits (380), Expect = 0.0
Identities = 399/408 (97%), Gaps = 6/408 (1%)
Strand = Plus / Plus
Query: 124 ccaacctctacattcttatgtgtcaaatgtcacctgtgcatcacgtaatagtaaagagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaacctctacattcttatgtgtcaaatgtcacctgtgcatcacgtaatagtaaagagga 379
Query: 184 ctccaagtctacatttcctttagtttgtttttaatagctctaatgacataatgggttgca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctccaagtctacatttcctttagtttgtttttaatagctctaatgacataatgggttgca 439
Query: 244 caaaactttttcaaacacacacacacacacacacacacacacaca----tatataacata 299
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 caaaacaatttcaaacacacacacacacacacacacacacacacacatatatataacata 499
Query: 300 tgttttataaaaaactttttgatgatgctaccagaaatttatcattataaaggttatata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgttttataaaaaactttttgatgatgctaccagaaatttatcattataaaggttatata 559
Query: 360 tatatgtgtgtacaaattcacacaagcatatacatacaaatgcacatctatgtaccctga 419
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tat--gtgtgtacaaattcacacaagcatatacatacaaatgcacatctatgtaccctga 617
Query: 420 ctttttctatttacttagtaaaaatttatttttactggatgatttttctgtttaagaaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctttttctatttacttagtaaaaatttatttttactggatgatttttctgtttaagaaat 677
Query: 480 gagaatgtttgatgagttttgatcatattttatttcctctctacattt 527
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 gagaatgtttgatgagttttgatcatattttattccctctctacattt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 925
Length adjustment: 10
Effective length of query: 517
Effective length of database: 915
Effective search space: 473055
Effective search space used: 473055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_a19.g1 MSMg01no339_a19.g1 CHROMAT_FILE:
MSMg01no339_a19.g1 PHD_FILE: MSMg01no339_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:49 2005
(468 letters)
>mm_chr8_101638213_101639085
Length = 873
Score = 822 bits (425), Expect = 0.0
Identities = 457/471 (97%), Gaps = 8/471 (1%)
Strand = Plus / Minus
Query: 1 ctgcaacgattgaatatatccatgctgcaagaccaatgacctagtatttatgtaaaaaca 60
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 473 ctgcaacaattgaatatatccatgctgcaagaccaatgacctagtattaatgtaaaaaca 414
Query: 61 ccttaatctctctctctctctc-----tttaaatatagctggaaccctttcttagaatga 115
||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||
Sbjct: 413 ccttaatatctctctctctctctttttttttaatatagctggaaccgtttcttagaatga 354
Query: 116 ccaaagaatcaatgagaaaacagatgaaggcattcagaaatttaaagtgtaattagttta 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccaaagaatcaatgagaaaacagatgaaggcattcagaaatttaaagtgtaattagttta 294
Query: 176 actgatattcccgttctttttgcaagacagttgaggctaccatttgtgtccactgcatta 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actgatattcccgttctttttgcaagacagttgaggctaccatttgtgtccactgcatta 234
Query: 236 atgtcactttcagtgcagtggaaatagtttaccttttc-ttttttcttcttcttc--ttt 292
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 233 atgtcactttcagtgcagtggaaatagtttaccttttctttttttcttcttcttcttttt 174
Query: 293 tttttttcttgtacagagtaaggactctaaattactaaatgaaaaggaaaattctaatgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tttttttcttgtacagagtaaggactctaaattactaaatgaaaaggaaaattctaatgt 114
Query: 353 aaatcagtagtagatcacatacacaagatgtataagatatttattctgaacagtcacacc 412
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 113 aaatcagtagtagatcacatacacaagatgtataaggtatttattctgaacagtcacacc 54
Query: 413 cacaaacgtgagagaaattgaaattcttaactcataataaattatcatttt 463
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cacaaacgtgagagaaattgaaattcttaactcataataaattatcatttt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 873
Length adjustment: 10
Effective length of query: 458
Effective length of database: 863
Effective search space: 395254
Effective search space used: 395254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
