Query= MSMg01no339_g08.b1 MSMg01no339_g08.b1 CHROMAT_FILE:
MSMg01no339_g08.b1 PHD_FILE: MSMg01no339_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:13 2005
(547 letters)
>mm_chr8_50308730_50309675
Length = 946
Score = 996 bits (515), Expect = 0.0
Identities = 536/543 (98%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 5 gaattctcctattatcgacggagcctgagacactctccctgtgttattacaaagtggaga 64
||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattctcctaggat-gacggagcctgagacactctccctgtgttattacaaaatggaga 263
Query: 65 ggtttctcatttactgctggtgaaaagtgtctattgtggcttctaataaaaacctgtgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtttctcatttactgctggtgaaaagtgtctattgtggcttctaataaaaacctgtgaa 323
Query: 125 gccgcatgggtgcaaagtaatttttttcaactcttcaggaaactggtggcaatgctaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccgcatgggtgcaaagtaatttttttcaactcttcaggaaactggtggcaatgctaagt 383
Query: 185 tcactgtttgagctctgggtgtgaagtatttcactctctctgtgatggcaactttacatt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcactgtttgagctctgggtgtgaagtatttcactctctctgtgatggcaactttacatc 443
Query: 245 cgccctgtaacctattcttacaaaccgcgtaattgggactagatttcacacaagggcgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgccctgtaacctattcttacaaaccgcgtaattgggactagatttcacacaagggcgac 503
Query: 305 gtttctattttattggctgcatatgattgttctaaacaccaaactttataaatgacacat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttctattttattggctgcatatgattgttctaaacaccaaactttataaatgacacat 563
Query: 365 gcgtcgcacgtgagcatcatcaatctctggttgtacttggccgtgttgcggaacgctgac 424
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 gcgtcgcacgcgagcatcatcaatctctggttgtactttgccgtgttgcggaacgctgac 623
Query: 425 aagatacagagcttgggaaggcctaggcagcatagtgcctgatcacagaaggcagaaaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagatacagagcttgggaaggcctaggcagcatagtgcctgatcacagaaggcagaaaac 683
Query: 485 cccgacatctcctggaaacacgttttagccgtcagtagtcaggctgcaaactctgctggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cccgacatctcctggaaacacgttttagccgtcagtagtcaggctgcaaactctgctggt 743
Query: 545 tgt 547
|||
Sbjct: 744 tgt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space: 502632
Effective search space used: 502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_g08.g1 MSMg01no339_g08.g1 CHROMAT_FILE:
MSMg01no339_g08.g1 PHD_FILE: MSMg01no339_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:13 2005
(420 letters)
>mm_chr8_50433723_50434541
Length = 819
Score = 783 bits (405), Expect = 0.0
Identities = 417/421 (99%), Gaps = 3/421 (0%)
Strand = Plus / Minus
Query: 1 tgggc-tttgacttggatcatgttctatagatattatctgtctttccatttttttttcat 59
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 619 tgggcttttgacttggatcatgttctatagatattatctgtctttcca-ttttttttcat 561
Query: 60 cgcaaagggaaggccggaacccactttttcttggggttttcttgcctgatgcattcacat 119
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcaaagggaaggcc-gaacccactttttcttggggttttcttgcctgatgcattcacat 502
Query: 120 ttggtcaggggcggggggggggtagttgttacatgaagtatctacagtaggagtttggga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggtcaggggcggggggggggtagttgttacatgaagtatctacagtaggagtttggga 442
Query: 180 atgactcggatttctattttggtgacatgattcatgaagacaggaagagaggacaagtgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgactcggatttctattttggtgacatgattcatgaagacaggaagagaggacaagtgt 382
Query: 240 gctgttaatatttgtgaattccacttcaggggaaaaagtcaaaccaaaggactaagagac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgttaatatttgtgaattccacttcaggggaaaaagtcaaaccaaaggactaagagac 322
Query: 300 aaactaaactgctggtcctgatcactattttcatctgcctgttaaaggccactcaatttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactaaactgctggtcctgatcactattttcatctgcctgttaaaggccactcaatttt 262
Query: 360 tctaacccctgaaccttgatctctgacccccccagccaataggagaattacaggaagcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaacccctgaaccttgatctctgacccccccagccaataggagaattacaggaagcca 202
Query: 420 g 420
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 819
Length adjustment: 9
Effective length of query: 411
Effective length of database: 810
Effective search space: 332910
Effective search space used: 332910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
