BAC Information

Click to search

BAC

Clone NameMSMg01-339L21
Chromosome8 (Build37)
Map Location 94,464,410 - 94,622,045
singlet/doubletdoublet
Overlap genenone
Upstream geneChd9, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339L21.T7 (MSMg01no339_l21.b1)MSMg01-339L21.TJ (MSMg01no339_l21.g1)
ACCAG453952AG453953
length751759
length of high quality
(start - end)		589 (46 - 634)519 (72 - 590)
definitionCHROMAT_FILE: MSMg01no339_l21.b1 PHD_FILE: MSMg01no339_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:39 2005CHROMAT_FILE: MSMg01no339_l21.g1 PHD_FILE: MSMg01no339_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,621,461 - 94,622,045)(94,464,410 - 94,464,927)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGCAATTGTTCTACCAAGTCCTGGAGCTAGGGCCTAGAGAGAC
TGCTCCATGGTTAAGAGCACTGGTTGCTCTTCCAGAGGCCCTGGGTTCAG
TTCCCAGTCATCCACATGATAGCTCACACTGGTCTGTAATTCCAACTGTA
GGGAATCTGACGTCTTCTTTAAGAGACCTCCACAGGCTCCAGGCACTGGT
GCACTTCCAAACATTCACAAAAAGGCCCAGGTCTGCCAGTACCTCAGGCT
TGGCGGGAAGATTTCTAGTCCCCAAGACCACCTCCGAAGACTACTGTTTA
ACATGACCTTTCTGTGGCTTTCACAATCTCCAGATACTAAACGGTCTTTC
TCCAGGGCCCATTAGAACAGGCACCTGCCCCTGCTCCACCGGAGTCCAAG
AAGAAAGGCCCTGGTCAGGCTTCAGATGGCATCTGATGCCATGGGTGCTC
TGAGGAAGTCGGTCATAGGGAATTGTATCTTAGTGCCAGGTGGGAGACAT
GCCCTTGTGATATACTCTCTGCCTTTACTGGGTATGTTGGTGTAGCCAGC
TCTTGACTCTAGGCTCAGTCATGTGACTTGCTTTGGTTAAGAAAATGTCA
GCGGGCGATCAGGAGAGCAGAGGCTCCAACAGGCCACTCCCTCTCTTGAG
NCTCTGCCTTCTGCATGCAAATACCTGGGTGTTAAAAGAGGTTTATGGAG
C

CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATAATGGGTGGTCGGCCTGTGTGAAGG
GTGGGACTGGGGAGGAAGTGAAGTCAGGAGATGGGTGGCTCTTGCAGACA
CTATATCCGGCTCGCACTAGATCCAGGTTGAAGGAAGGTGGGGCTTGGAT
ATAATAAGCAGGTTTGTAGGAGGGGAAGGTCTTGGTTTGGAGCCTTCATT
CCTCCAAAGGTAAAGCAGAGCTGTCAGCCCAGCAGGATATGCAGGCCAGT
GTTTGGAGCCAGGAGGAGGCATGAAGCAGGCTTGCTTCTAAGCAGGACTT
TAACTAGGGACCCCCTGATGGCAGAGCCCCAGGAATCTTCACGTGGCTGG
AACTTTGCCTCCCACAGGCAGTTCTTCCCTGGGAACTTAATCTGGCCACA
GAGAGTTTCAGGTGGCAGGGGAATAGTTAATTTTCAGATGTAAGGTTGTC
ACTGTCTTGAAGTTATTCCTATCTGAGATGATGAAAAGCCACCCCACCCC
TCCATTCAGGACCTGCAAATAAAGAGCTAGGGAAATGGCCAGACTAGAAA
CCTGCCTTGCTGGGCCATGAAAATTAGGACTTAGGGGGCTGGTTTGTCCC
CTCATCCATCTTCAGCCCAGACTCCCCAGTTCCTGCCTGTCAGGAAGAGC
CCTTGATCCCCCCTGAGCCCAGCTTCCTGCCTCTGGGAAGCAGGGGGCCT
GAACCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_l21.b1 MSMg01no339_l21.b1 CHROMAT_FILE:
MSMg01no339_l21.b1 PHD_FILE: MSMg01no339_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
         (589 letters)



>mm_chr8_94621079_94622067
          Length = 989

 Score = 1123 bits (581), Expect = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagcaattgttctaccaagtcctggagctagggcctagagagactgctccatg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gaattctaagcaattgttttaccaagtcctggagctagggcctagagagactgctccatg 908

                                                                       
Query: 65  gttaagagcactggttgctcttccagaggccctgggttcagttcccagtcatccacatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gttaagagcactggttgctcttccagaggccctgggttcagttcccagtcatccacatga 848

                                                                       
Query: 125 tagctcacactggtctgtaattccaactgtagggaatctgacgtcttctttaagagacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tagctcacactggtctgtaattccaactgtagggaatctgacgtcttctttaagagacct 788

                                                                       
Query: 185 ccacaggctccaggcactggtgcacttccaaacattcacaaaaaggcccaggtctgccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ccacaggctccaggcactggtgcacttccaaacattcacaaaaaggcccaggtctgccag 728

                                                                       
Query: 245 tacctcaggcttggcgggaagatttctagtccccaagaccacctccgaagactactgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tacctcaggcttggcgggaagatttctagtccccaagaccacctccgaagactactgttt 668

                                                                       
Query: 305 aacatgacctttctgtggctttcacaatctccagatactaaacggtctttctccagggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aacatgacctttctgtggctttcacaatctccagatactaaacggtctttctccagggcc 608

                                                                       
Query: 365 cattagaacaggcacctgcccctgctccaccggagtccaagaagaaaggccctggtcagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cattagaacaggcacctgcccctgctccaccggagtccaagaagaaaggccctggtcagg 548

                                                                       
Query: 425 cttcagatggcatctgatgccatgggtgctctgaggaagtcggtcatagggaattgtatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttcagatggcatctgatgccatgggtgctctgaggaagtcggtcatagggaattgtatc 488

                                                                       
Query: 485 ttagtgccaggtgggagacatgcccttgtgatatactctctgcctttactgggtatgttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttagtgccaggtgggagacatgcccttgtgatatactctctgcctttactgggtatgttg 428

                                                        
Query: 545 gtgtagccagctcttgactctaggctcagtcatgtgacttgcttt 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgtagccagctcttgactctaggctcagtcatgtgacttgcttt 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_l21.g1 MSMg01no339_l21.g1 CHROMAT_FILE:
MSMg01no339_l21.g1 PHD_FILE: MSMg01no339_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
         (519 letters)



>mm_chr8_94464209_94465127
          Length = 919

 Score = 1002 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   aataatgggtggtcggcctgtgtgaagggtgggactggggaggaagtgaagtcaggagat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aataatgggtggtcggcctgtgtgaagggtgggactggggaggaagtgaagtcaggagat 261

                                                                       
Query: 62  gggtggctcttgcagacactatatccggctcgcactagatccaggttgaaggaaggtggg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggtggctcttgcagacactatatccggctcgcactagatccaggttgaaggaaggtggg 321

                                                                       
Query: 122 gcttggatataataagcaggtttgtaggaggggaaggtcttggtttggagccttcattcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcttggatataataagcaggtttgtaggaggggaaggtcttggtttggagccttcattcc 381

                                                                       
Query: 182 tccaaaggtaaagcagagctgtcagcccagcaggatatgcaggccagtgtttggagccag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccaaaggtaaagcagagctgtcagcccagcaggatatgcaggccagtgtttggagccag 441

                                                                       
Query: 242 gaggaggcatgaagcaggcttgcttctaagcaggactttaactagggaccccctgatggc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaggaggcatgaagcaggcttgcttctaagcaggactttaactagggaccccctgatggc 501

                                                                       
Query: 302 agagccccaggaatcttcacgtggctggaactttgcctcccacaggcagttcttccctgg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agagccccaggaatcttcacgtggctggaactttgcctcccacaggcagttcttccctgg 561

                                                                       
Query: 362 gaacttaatctggccacagagagtttcaggtggcaggggaatagttaattttcagatgta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaacttaatctggccacagagagtttcaggtggcaggggaatagttaattttcagatgta 621

                                                                       
Query: 422 aggttgtcactgtcttgaagttattcctatctgagatgatgaaaagccaccccacccctc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aggttgtcactgtcttgaagttattcctatctgagatgatgaaaagccaccccacccctc 681

                                                 
Query: 482 cattcaggacctgcaaataaagagctagggaaatggcc 519
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cattcaggacctgcaaataaagagctagggaaatggcc 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |