Query= MSMg01no340_d11.b1 MSMg01no340_d11.b1 CHROMAT_FILE:
MSMg01no340_d11.b1 PHD_FILE: MSMg01no340_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:12 2005
(650 letters)
>mm_chr8_11227857_11228906
Length = 1050
Score = 996 bits (515), Expect = 0.0
Identities = 634/731 (86%), Gaps = 89/731 (12%)
Strand = Plus / Minus
Query: 8 ttctatgcctgtttcactattcaccttggtgcccagggccgatggtggtgtttgagccct 67
||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 1014 ttctatgcctgcatcactattcagcttggtacctagggccgatggtggtgtttgagccct 955
Query: 68 ttctgaagaatggaacttttcaatttctagtctaagtatttaaatattatagcatgggca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttctgaagaatggaacttttcaatttctagtctaagtatttaaatattatagcatgggca 895
Query: 128 cagagtagctgctaagaacttaccttcttgagtgagcctccactaaagcttcatgtgtgg 187
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 894 cagagtagctgctaagaacttgccttcttgagtgagcctccactaaagcttcatgtgtgg 835
Query: 188 accccaaggctctacagggcacagttgactgggtgacatcttctctgtccccagccggtg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 accccaaggctctacagggcacagttgactgggtgacatcttctctgtccccagccggtg 775
Query: 248 cactttggctttgaggagcaccgggaacaagaaattcagttatcccttccatattagtcc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cactttggctttgaggagcaccgggaacaagaaattcagttatcccttccatattagtcc 715
Query: 308 cagacttgatggactttgag---------------------------------------- 327
||||||||||||||||||||
Sbjct: 714 cagacttgatggactttgagcagggccctagaacctctgcaagtcccatccctgtgtggg 655
Query: 328 -caggggcttcagtatggaaccctcagtgatgcttagggagtatgggagagtggatgggc 386
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ccaggggcttcagtatggagccctcagtgatgcttagggagtatgggagagtggatgggc 595
Query: 387 tttgtggacaggagcgcttactttcgtacccagctgcttacacttcctggctgggtaatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttgtggacaggagcgcttactttcgtacccagctgcttacacttcctggctgggtaatc 535
Query: 447 t-----------------------------------------------cttatagagttg 459
| ||||||||||||
Sbjct: 534 tcatatacatggctcacttttcttttagactgacaatcccatgtcttccttatagagttg 475
Query: 460 tgataaatggtacacaagggtcctgcccacacatgggtgtgtgacaggccatctccactt 519
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 474 tgataaatggtacacaagggtcctg-ccacacatgggtgtgtgacaggccatctccattt 416
Query: 520 tttaaaaaagatttatttatttattatatgtaagtacatgatagttgatttcagacacac 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttaaaaaagatttatttatttattatatgtaagtacatgatagttgatttcagacacac 356
Query: 580 cagaagagggcatccggtctcattacagatggttgtgagccactgtgtggttgctgggat 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cagaagagggcatccggtctcattacagatggttgtgagccactgtgtggttgctgggat 296
Query: 640 ttgaactcagg 650
|||||||||||
Sbjct: 295 ttgaactcagg 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_d11.g1 MSMg01no340_d11.g1 CHROMAT_FILE:
MSMg01no340_d11.g1 PHD_FILE: MSMg01no340_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:12 2005
(595 letters)
>mm_chr8_11067940_11068934
Length = 995
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%)
Strand = Plus / Plus
Query: 1 actctccaggacctgcattgtggaaggacagaactgaaccctgcaggttgttctcggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctccaggacctgcattgtggaaggacagaactgaaccctgcaggttgttctcggacc 260
Query: 61 tccacacattcatcatggcatgcacataaatacacatgaaatatagttaaaatgactttc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacacattcaccatggcatgcacataaatacacatgaaatatagttaaaatgactttc 320
Query: 121 atgtgttatttccttcagtcttcacaggcatggctttttatttagtgttatggtatatct 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 atgtgttatttccttcagtcttcacaggcatggctttttatttagtgatatggtatatct 380
Query: 181 catatatctcagatttcatttgtatatgtgtatatatgcatacatatatatgcacatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatatctcagatttcatttgtatatgtgtatatatgcatacatatatatgcacatttt 440
Query: 241 ttctaataagcaattcgaagtggagctttggtgattgcttgtttccatgtggcttttaca 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaataagcaattcaaagtggagctttggtgattgcttgtttccatgtggcttttaca 500
Query: 301 atgaccactgctagaatttcaggattgagacagcctccctttgcatgccttgattttggt 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgatcactgctagaatttcaggattgagacagcctccctttgcatgccttgattttggt 560
Query: 361 tgacaaataggctgcaaagagatcaaatactagtgggaagagaggcagttgctaagagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacaaataggctgcaaagagatcaaatactagtgggaagagaggcagttgctaagagaa 620
Query: 421 ttgattgacaacaagtggtggtaatctggcatctgaaaagaatgcaaatgctaccgaaaa 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcgattgacaacaagtggtggtaatctggcatctgaaaagaatgcaaatgctaccgaaaa 680
Query: 481 cgtaaatatccacctttaaaacatcagtagtatgtgggtgtgtacgcacaggtgtgtgcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtaaatatccacctttaaaacatcagtagtatgtgggtgtgtacgcacaggtgtgtgcg 740
Query: 541 tatgcatgtgcatgcctgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtg 594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 tatgcatgtgcatgcctgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
