Query= MSMg01no340_h07.b1 MSMg01no340_h07.b1 CHROMAT_FILE:
MSMg01no340_h07.b1 PHD_FILE: MSMg01no340_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:28 2005
(507 letters)
>mm_chr8_112272955_112273861
Length = 907
Score = 721 bits (373), Expect = 0.0
Identities = 462/517 (89%), Gaps = 45/517 (8%)
Strand = Plus / Minus
Query: 4 ggaattcactttgtatacccggctggccttaaactcagaaatctgcctgtctttgcctcc 63
|||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 558 ggaactcactttgtagaccaggctggccttaaactcaaaaatctgcctgtctttgcctcc 499
Query: 64 caagtgctgggattaaaggcatgtgccaccacctcctggtcttctaaagcaagcagaaaa 123
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 caagtgctgggattaaaggtgtgtgccaccacctcctggccttctaaagcaagcagaaaa 439
Query: 124 tgtgctctgagagactatggttttcttacatccactccattcattttaaagaattgtatg 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtgctctgagagactatagttttcttacatccactccattcattttaaagaattgtatg 379
Query: 184 taaggaattcttggtggctcaacaatggcctgaatgtattagtttctttgtggcctaact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaggaattcttggtggctcaacaatggcctgaatgtattagtttctttgtggcctaact 319
Query: 244 gcttagatatgactcctttaattcaaataaagattttgtgctggctagcagcttaaattt 303
||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 318 gcttatatatgactc---------aaata----ttttgtgctggctagcagcttaaattt 272
Query: 304 gatccctaggatccatccacctggcggaaggagagaaccaactctaagttgtcttccacc 363
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gatcc-------------acctggcggaaggagagaaccaactctaagttgtcttccacc 225
Query: 364 ttcacattgtacagctatacacacacaccacaccacaccacaccacaccacaccacacca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttcacattgtacagctatacacacacaccacaccacaccacaccacaccacaccacacca 165
Query: 424 ca-----tcacaccac----acacgcacacaca----tgcatactcgagcacacacacac 470
|| ||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 164 caccacatcacaccacccacacacgcacacacacacatgcatactcaagcacacacacac 105
Query: 471 acacacacacatcattgtaatactgtttgtttgtttg 507
||||| ||||||||||||||||||||||||||
Sbjct: 104 acaca------tcattgtaatactgtttgtttgtttg 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_h07.g1 MSMg01no340_h07.g1 CHROMAT_FILE:
MSMg01no340_h07.g1 PHD_FILE: MSMg01no340_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:28 2005
(621 letters)
>mm_chr8_112114082_112115102
Length = 1021
Score = 1149 bits (594), Expect = 0.0
Identities = 614/621 (98%)
Strand = Plus / Plus
Query: 1 cagttaaatgagaattccagataaagagccatgaactttccaataatacattgtgcatgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cagttaaatgagaattccagataaagagccatgaactttccaataatacattctgcatgt 260
Query: 61 attatcacagacctatgctaaaagtatatctgcccttcatatttaattgtgcatactatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatcacagacctatgctaaaagtatatctgcccttcatatttaattgtgcatactatt 320
Query: 121 atttagggctaaaactgccaacccctcagtgaatgtggcttaataacggtttaacttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttagggctaaaactgccaacccctcagtgaatgtggcttaataacggtttaacttcca 380
Query: 181 agcctgagtcatataaggtacctaaaaccttggtctgctctcttgtagactgtcactctg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctgagtcatataaggtaccgaaaaccttggtctgctctcttgtagactgtcactctg 440
Query: 241 gagaagtcagacacagtattgtaaagacgccaccaacaggctttgaagaaagctcctgct 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaagccagacacagtattgtaaagacgccaccaacaggctttgaagaaagctcctgct 500
Query: 301 ggaggccagcattgcctcccccatcaggcgagggaaccttttagttgttttttaagcagt 360
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ggaggccagcactgcctcccccatcaggcgagggaacctttcagttgttttttaagcagt 560
Query: 361 ggtagaaccaggcttgtaactcagtagcagaacacttgcctagcatgctcaaggccctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtagaaccaggcttgtaactcagtagcagaacacttgcctagcatgctcaaggccctgg 620
Query: 421 gggtgatcccaagtactgcaaaaaacaaaaataagttttaagtaagaagacttggttgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtgatcccaagtactgcaaaaaacaaaaataagttttaagtaagaagacttggttgga 680
Query: 481 agtgtttctctctagtgtgcatgtgtgcgcatgttctttgaatgtgtgcggaggccagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgtttctctctagtgtgcatgtgtgcgcatgttctttgaatgtgtgcggaggccagag 740
Query: 541 gacaacttcggatgttgttcctcgggcactgtctgcttttcttattttcaggcagcctca 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gacaacttcggatgtcgttcctcgggcactgtctgcttttcttattttcaggcagcctca 800
Query: 601 cactgacctgnaactctccag 621
|||||||||| ||||||||||
Sbjct: 801 cactgacctggaactctccag 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
