Query= MSMg01no340_h16.b1 MSMg01no340_h16.b1 CHROMAT_FILE:
MSMg01no340_h16.b1 PHD_FILE: MSMg01no340_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:30 2005
(645 letters)
>mm_chr8_59647789_59648833
Length = 1045
Score = 810 bits (419), Expect = 0.0
Identities = 431/435 (99%)
Strand = Plus / Plus
Query: 211 tcgcacaaaggagccattcaccagaatgaccaatattgataaactatgccatagcactgt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcgcacaaaggagccattcaccagaatgaccaatattgataaactatgccatagcactgt 470
Query: 271 aaatcagatgtcttttttttccaactggaagctttgcttacaggacacagtaccaaaata 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaatcagatgtcttttttttccaactggaagctttgcttacaggacacagtaccaaaata 530
Query: 331 cttccagtgggtaaagttattctctgagttaaagagggccactttcatttacaaacaagt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cttccagtgggtaaagttattctctgagttaaagagggccactttcatttacaaacaagt 590
Query: 391 ttctcttaatcagatcctgactatcctattagtttcagaaaaccgcaaattagatgcaaa 450
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 591 ttctcttaatcagatcctgactatcctattagttgcagaaaaccgcaaattagatgcaaa 650
Query: 451 gcactggacaaaactggtcacacatgacaaaagtgtgatcaggataaaaaatacgtgctt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gcactggacaaaactggtcacacatgacaaaagtgtgatcaggataaaaaatacgtgctt 710
Query: 511 ggggaccttcatgcacaaatgtaaactgtgaaacattggccaaagaacaatccaaaataa 570
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 711 ggggaccttcatgcacaaacgtaaattgtgaaacattggccaaagaacaatccaaaataa 770
Query: 571 attttaaatgagcacagatctacaagagaaatcctttgtaatgctttccagggcacgtca 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 attttaaatgagcacagatctacaagagaaatcctttgtaatgctttccagggcacgtca 830
Query: 631 ctttggaacattaca 645
|||| ||||||||||
Sbjct: 831 cttttgaacattaca 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_h16.g1 MSMg01no340_h16.g1 CHROMAT_FILE:
MSMg01no340_h16.g1 PHD_FILE: MSMg01no340_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:30 2005
(572 letters)
>mm_chr8_59807690_59808662
Length = 973
Score = 1046 bits (541), Expect = 0.0
Identities = 565/573 (98%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 1 caagctctgaaatgaagtccctggcctggccaatcggaatttttggaggttttcatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caagctctgaaatgaagtccctggcctggccaatcggaatttttggaggttttcatgaaa 714
Query: 61 tatgggtgggtttgtaagtttgttagttctctgggaaacacaaatctccatcctggacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tatgggtgggtttgtaagtttgttagttctctgggaaacacaaatctccatcctggacag 654
Query: 121 ctcagatactaagttcatcacagcacctgtcctgccagccaacagctcttcagggtcaga 180
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 653 ctcagatactgagttcatcacagcacctgtcctgccagccaacagctcgtcagggtcaga 594
Query: 181 gggcgtgagcatctaggaatcacacacagttctcctttctctgctggagacaccgcaaca 240
||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 593 gggcgtgagcatctaggtatcacacacagatctcctttctctgctcgagacgccgcaaca 534
Query: 241 gaacagaggacaaagctaccgcgctagtcgcctgtcctgctcaagaagtgtcaccagctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaacagaggacaaagctaccgcgctagtcgcctgtcctgctcaagaagtgtcaccagctg 474
Query: 301 ggcagctgtcactagatctattaggctctaaagcaggtgcagaggagcagtcacaagaga 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 473 ggcagctgtcactagatctattaggctctaaagcaggtgcagaggtgcagtcacaagaga 414
Query: 361 agtgaagtcctgtaatcactaagttgtccccttaggcaggaaaattccatcattttggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agtgaagtcctgtaatcactaagttgtccccttaggcaggaaaattccatcattttggtc 354
Query: 421 cggagaactgtagtacaggcgggtgcagtgggcgggacactagttacctctaaaaagttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cggagaactgtagtacaggcgggtgcagtgggcgggacactagttacctctaaaaagttc 294
Query: 481 cctgagagtcgtttggccgcataagggctactcgtaaccacgtgggtccccgttttgcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctgagagtcgtttggccgcataagggctactcgtaaccacgtgggtccccgttttgcac 234
Query: 541 tggcgttactcccccccc-aacccccgcgcccg 572
|||||||||||||||||| ||||||||||||||
Sbjct: 233 tggcgttactcccccccccaacccccgcgcccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
