BAC Information

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BAC

Clone NameMSMg01-341I23
Chromosome8 (Build37)
Map Location 16,571,823 - 16,572,224
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneEG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341I23.T7 (MSMg01no341_i23.b1)MSMg01-341I23.TJ (MSMg01no341_i23.g1)
ACCAG455325AG455326
length785804
length of high quality
(start - end)		407 (36 - 442)372 (68 - 439)
definitionCHROMAT_FILE: MSMg01no341_i23.b1 PHD_FILE: MSMg01no341_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:51 2005CHROMAT_FILE: MSMg01no341_i23.g1 PHD_FILE: MSMg01no341_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCA
TTTTAAAGTGCTTCTCTGAATTTCCTTAATCAAGGCATATTTGCAAACTA
TAAGATTTTGTTTACCATTTCAAATACAGACCTGCATTTCTCTCTTGCAC
TTATTTATTTTCTTTATCTTTTATTCTGTGTTTATTTTTGAAGCAAAATT
CTTCTAAGATAAGAAATATTTTTTTAACATCAAGCTAGGAGGAGTATGAA
TGTTTCCAAGGGTCTGAGATTTCAAGTGCTTCAAGGAAATGGAGATTCAA
AGACCCTGAACACTACAGATTGATGGCTATGTTTCAAGAGGAAGCAGAAA
TAGCACTTAGGCATTGACAGTGCCTGCCGTCTAGAATGGATTCTGCTTCT
AATTTACCATTGCATCCAAGGTAAAAAGTACATCTCCTTCATTAATGGTA
GCACAGAGCCCAGTAGCCATCTAGCAGACAAACACGGAAGTGTGTTTGTG
GAGAGCACAAAAGGAATCCATTTCCTCCTAAGTATATGAACAGGGCTTCA
GCGGTTTTCCTTTAATAAACTGAATTATAATGCGGAAAAAAACGAGTTTG
ATTGACTGGGAAAAATATGCAAAGGTTTAAAATTATTTTATCTTATAACC
ACTTACTTAAATTACCCCCCCCCCTGAAGGCGCCTTGAAATTCTTCTCCT
GGGTTTTTATTTCTTTTTCGCACTTTTTATAAGCCCCCTCCCCCGGCGGA
GGGGCGTTTTGCCCCTATTCTTTATCCTCCCCCCA

AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACAC
ATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCT
TAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTG
GAGCTGAGATAAAAGGATGGACCATGTAGACACTACCATATCCGGGGATC
CATCCCATAATCAGCTTCCAAATGCTGACACCATTGCATTCACTAGCAAG
ATTATGCTGTAAGGACCCTGATATAGCTGTCTCTTGTAAAATAAGCCTGG
CTCTATAAACAATAAAAGGGATGCCCCCATTTGCCATTTGGAGGATCATA
TGGCTCCCCTTGCAGGACCTTTAAAAGTACCTTTTATTTTCCTTCGCCTT
CCCCCCCTCCTTGCTCTTTTCTTTTTTTATCCACTTCTCCCTTCCTTTCC
TTACATCCTCTTTTTCCTTTTCCGCTTCCTCTTTTTACCTTCCTTTTTTC
CTTGTTTCTTGTTTTTCTCTCTCCTTCTTCCCCCCCTATTTTACCCTTTC
TTTCTCTCCCTTTACATTACCCTATCCTCCTTTCACCCCCATCCCTTTTT
CATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_i23.b1 MSMg01no341_i23.b1 CHROMAT_FILE:
MSMg01no341_i23.b1 PHD_FILE: MSMg01no341_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:51 2005
         (407 letters)



>mm_chr8_16571619_16572424
          Length = 806

 Score =  725 bits (375), Expect = 0.0
 Identities = 396/403 (98%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcattttaaagtgcttctctgaatttccttaatcaaggcatatttgcaaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcattttaaagtgcttctctgaatttccttaatcaaggcatatttgcaaact 264

                                                                       
Query: 65  ataagattttgtttaccatttcaaatacagacctgcatttctctcttgcacttatttatt 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 265 ataagattttgtttaccatttcaaatacagacctgcacttctctcttgcacttatgtatt 324

                                                                       
Query: 125 ttctttatcttttattctgtgtttatttttgaagcaaaattcttctaagataagaaatat 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctttatcttttattctttgtttatttttgaagcaaaattcttctaagataagaaatat 384

                                                                       
Query: 185 ttttttaacatcaagctaggaggagtatgaatgtttccaagggtctgagatttcaagtgc 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttt-acatcaagctaggaggagtatgaatgtttccaagggtctgagatttcaagtgc 443

                                                                       
Query: 245 ttcaaggaaatggagattcaaagaccctgaacactacagattgatggctatgtttcaaga 304
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcaaggaaatggagattcaaggactctgaacactacagattgatggctatgtttcaaga 503

                                                                       
Query: 305 ggaagcagaaatagcacttaggcattgacagtgcctgccgtctagaatggattctgcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaagcagaaatagcacttaggcattgacagtgcctgccgtctagaatggattctgcttc 563

                                                      
Query: 365 taatttaccattgcatccaaggtaaaaagtacatctccttcat 407
           ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 taatttaccattgcatccaagctaaaaagtacatctccttcat 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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