BAC Information

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BAC

Clone NameMSMg01-341M03
Chromosome8 (Build37)
Map Location 68,396,494 - 68,541,638
singlet/doubletdoublet
Overlap geneMarch1
Upstream geneLOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341M03.T7 (MSMg01no341_m03.b1)MSMg01-341M03.TJ (MSMg01no341_m03.g1)
ACCAG455474AG455475
length728763
length of high quality
(start - end)
576 (43 - 618)433 (78 - 510)
definitionCHROMAT_FILE: MSMg01no341_m03.b1 PHD_FILE: MSMg01no341_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:05 2005CHROMAT_FILE: MSMg01no341_m03.g1 PHD_FILE: MSMg01no341_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,396,494 - 68,397,065)(68,541,206 - 68,541,638)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGTCCATACCAAGTTTATAAGCATTTGAAAAACAACAATTATGATAA
CTGCTTATGAGCTACAGACTTCATTCTTGATAAAAGCTGAGCTGGAGAAT
GAGCCCAGTCCACAGTTATTAATGTGCTTGTCCTCCAAACAGAAGCCACA
CAAATATTTCCATTTAGTTATAGGACCATCTAGGCCACTTTACACTACCA
CCACCAAGGCAGACCTTAAACAGTGCAAATTACAGAGCAACTGCCATCTA
TGAGATCCGCACAGGATTAGCTGTGTGGATGGGATGGTTCAAGTCACGTC
CATTTTGTTTCATTACCATAATGAATGCTAGTCCACCATGTAGGGCACTT
TTTGTTTACCCTCTTCTATTAGTTACTCTATGATGGACGTGTAAGCGATT
GAAGTTGGTCCTTTTCAAGTAGCAATCTAATGTTTACATTTGGACACAGG
GCTCACAAGTGAGTAGTCTCACAGAGGTTTTCTGGTGAAGACTAGTGAGT
CAATACATTACTGTAAAATGCATTTGCCTTCTTAATAGAAATGGCCACAG
CAGGAATCACAGGCATTCAGCACACCGATTTCAGGTTAAAAATTACATTT
CTTACTCAAAAGTGTTTGCATGGCAAACTGTTTAATTTTCCCTACGCCTC
TCAGTTGTAACCCTAATTAACATGGCCN
NCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGTAAGCCTCTCTGGCAGCT
GATTGACTTTATGCTATATATGTTGACAAGCCAGAGCCCTTGTGAACTAG
AGCTGACAAAATACACGAATTATTCTAGGGGGACAAAGAATTAAAAGTTA
GTGTTTGAAGGTGGCGGGATGTTTCTTTTCCATGTTCAATGTTACTGTTT
AATTTTCTTTGATAATGCCACTTCTGTTAATGTGCACTGATGGTATAGTA
CACTCTGATGGGAAAATTTAACCCTCCAAATAGTGTTGCAAACAAGGTCC
TTGTTTCATTTTTCCCCTTTACATAAAGGTTTACTAGAAGCAATCCATTC
TCTTTTAGATAAGACTGTTTCATAAAAAATTCAGCCTTATAAGATATATA
CACAAACAGGAAAAACAGACTCAGCAGGTTGCGTTTATATATTTGTTTAT
ATATCCATACATATGTGCATATAAAAATAGCAATCCCAACTGAGGTTATT
AACTTTGATGCCAATGACCACCTGATACGCTTTACATTTAATCCCCCTGG
CCTTACATGCTTTGCTGATCTTTTCTTGTTCGTATCCCTCTTTTTCCTCC
TTTTTTCCGCTTTTCTTTTTTTTTACCACGCCTCTTTCCCCCCCCTTTTC
CCCTTCCTCCTTTTCCCCTTTCTTTCCCCTTTTCTACTTTTCTCTCTATC
TCCTTCTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_m03.b1 MSMg01no341_m03.b1 CHROMAT_FILE:
MSMg01no341_m03.b1 PHD_FILE: MSMg01no341_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
         (576 letters)



>mm_chr8_68396290_68397265
          Length = 976

 Score = 1052 bits (544), Expect = 0.0
 Identities = 565/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtccataccaagtttataagcatttgaaaaacaacaattatgataactgctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtccataccaagtttataagcatttgaaaaacaacaattatgataactgctt 264

                                                                       
Query: 65  atgagctacagacttcattcttgataaaagctgagctggagaatgagcccagtccacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgagctacagacttcattcttgataaaagctgagctggagaatgagcccagtccacagt 324

                                                                       
Query: 125 tattaatgtgcttgtcctccaaacagaagccacacaaatatttccatttagttataggac 184
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tattaatgtgctcgtcctccaaacagaagccacacaaatttttccatttagttataggac 384

                                                                       
Query: 185 catctaggccactttacactaccaccaccaaggcagaccttaaacagtgcaaattacaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catctaggccactttacactaccaccaccaaggcagaccttaaacagtgcaaattacaga 444

                                                                       
Query: 245 gcaactgccatctatgagatccgcacaggattagctgtgtggatgggatggttcaagtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gcaactgccatctatgagatccgcacaggattagctgtgtggatgggatggatcaagtca 504

                                                                       
Query: 305 cgtccattttgtttcattaccataatgaatgctagtccaccatgtagggcactttttgtt 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catccattttgtttcattaccataatgaatgctagtccaccatgtagggcactttttgtt 564

                                                                       
Query: 365 taccctcttctattagttactctatgatggacgtgtaagcgattgaagttggtccttttc 424
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 565 taccctcttctattagttactctatggtggacgtgtaagcaattgaagttggtccttttc 624

                                                                       
Query: 425 aagtagcaatctaatgtttacatttggacacagggctcacaagtgagtagtctcacagag 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 aagtagcaatctaatgtttacatttggacacagggctcacaagtgaatagtctcacagag 684

                                                                       
Query: 485 gttttctggtgaagactagtgagtcaatacattactgtaaaatgcatttgccttcttaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttttctggtgaagactagtgagtcaatacattactgtaaaatgcatttgccttcttaat 744

                                           
Query: 545 agaaatggccacagcaggaatcacaggcattc 576
           ||||||||||||||||||||||||||||||||
Sbjct: 745 agaaatggccacagcaggaatcacaggcattc 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no341_m03.g1 MSMg01no341_m03.g1 CHROMAT_FILE:
MSMg01no341_m03.g1 PHD_FILE: MSMg01no341_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:05 2005
         (433 letters)



>mm_chr8_68541090_68541922
          Length = 833

 Score =  814 bits (421), Expect = 0.0
 Identities = 430/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtaagcctctctggcagctgattgactttatgctatatatgttgacaagccagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttctgtaagcctctctggcagctgattgactttatgctatatatgttgacaagccagagc 490

                                                                       
Query: 61  ccttgtgaactagagctgacaaaatacacgaattattctagggggacaaagaattaaaag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccttgtgaactagagctgacgaaatacacgaattattctagggggacaaagaattaaaag 430

                                                                       
Query: 121 ttagtgtttgaaggtggcgggatgtttcttttccatgttcaatgttactgtttaattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttagtgtttgaaggtggcgggatgtttcttttccatgttcaatgttactgtttaattttc 370

                                                                       
Query: 181 tttgataatgccacttctgttaatgtgcactgatggtatagtacactctgatgggaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgataatgccacttctgttaatgtgcactgatggtatagtacactctgatgggaaaat 310

                                                                       
Query: 241 ttaaccctccaaatagtgttgcaaacaaggtccttgtttcatttttcccctttacataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 309 ttaaccctccaaatagtgttgcaaacaaggtccttgtttcatttttcccctttgcataaa 250

                                                                       
Query: 301 ggtttactagaagcaatccattctcttttagataagactgtttcataaaaaattcagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggtttactagaagcaatccattctcttttagataagactgtttcataaaaaattcagcct 190

                                                                       
Query: 361 tataagatatatacacaaacaggaaaaacagactcagcaggttgcgtttatatatttgtt 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tataagatatatacacaaacaggaaaaacagactcagcaggttgtgtttatatatttgtt 130

                        
Query: 421 tatatatccatac 433
           |||||||||||||
Sbjct: 129 tatatatccatac 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)