BAC Information

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BAC

Clone NameMSMg01-342K19
Chromosome8 (Build37)
Map Location 84,520,719 - 84,520,963
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneUsp38, EG70793, LOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342K19.T7 (MSMg01no342_k19.b1)MSMg01-342K19.TJ (MSMg01no342_k19.g1)
ACCAG456168AG456169
length760737
length of high quality
(start - end)
245 (58 - 302)418 (65 - 482)
definitionCHROMAT_FILE: MSMg01no342_k19.b1 PHD_FILE: MSMg01no342_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:15 2005CHROMAT_FILE: MSMg01no342_k19.g1 PHD_FILE: MSMg01no342_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCGCTATACGACTCCTATTTTCAGAAATGCGCGGAATTCTTTGTCTTTC
TTTTATAGCACAATCAGGTTTTCTTTTGGGGTATGTTTGGGATTACTTGA
GAGATGCAGTAGGTAGTTGTTGAAATGATTATCCCCAGTGAAATATATCT
GCGAAGACTGTGGAGCTCAAAGAGAGTAGGCTGAGGAGACAGATGGTGTT
TATAGTACATTTAAAACCTCAGCATTTACTTTAAAACTGGAGGACTCCTA
TCTTTGGCAGCATCCCAAAGCCAAACTATTTCCCATTGATTGGTATGAAT
CACTTTTCTTACTTGGCTCCTGGGCCTTTTCCACCACACACACCTCTTAA
GTGCCAACAAATCTGCAATTGACCTTTTTACAGCTCTATGCAGAGATGCC
TACCATGGGTTTCTAATCCTTGTCAATTTCTTTGCAGACTGAGCTTTTTG
TCCATGCCTTCAAGGACCATCTGGNCATGAGTGTTCTTTTTAACTCTCTA
CACTGCAATGTCCCGGAGTTTTCCTTTATAAGCCAGCCCTCTCTTTATTG
TTTTACAGAGGAGTTAAAGTCTTTTCTATGAGACCCCCCCGTTTTTATTT
ACCCATTCTCTTTCCCCCCCCTTCTGACTATCTTTGTATTTTTTTTTGGC
TCACTTCCCTTCTCCCCTTTTACCTTCCCCCCTTTTATGTTTATTACAAC
CACTTTGTTTGTGTGGCTAATCGTCACCCTCATCTTGTTTTTTACTATCT
CTTTCCACCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACCTGTTTACCTGTGTTCTCCTGTATTTCTTTAAG
GGAGTTATTTATGTCCTTCTTAAATTCCTCTATCATCATCATGAGATGTG
AATTAAATCAGAAATCTTGTTTTTCCAGTGTGTTGGGGGTATCTATGGCT
TGCTGTGGTGGAAGAACTGGGTTTTGATGGTGTCAAGTAGCCTTTGTTTC
TGTTGATTAGTTCCTTGGGTTTTCCTCCTGCCATCTGGTTATCTCTGGTG
TTAGCTGGTCTTACTGCCCAGTTTGTTCCTTCTGTGAGCCAGCCTGAGAG
CCTGTGTGTAGCTTCCCCCAGCCTGAAGTGGGCTTGTGCAGACCTTGTTG
CCACTGAAGTGGGTCCACCTGTGGTGCAGCTTTCTGACTTGACTGGCTTC
TTTTGATGTGTCAACTGCCCTGCTCTTCTCTGAGATCTTGCTGGCTGCTG
AAACACCCTTGAGACAATCCTTGTTGAGTCCTTGGGTTTGGCTCCGTGGA
CTAAGGATAACTTGGGTCGGCGCGTATTTTTTCTTTTTATTCCTCACCCC
CCTTTTCCTCCAGTTGACGTCCTCTTTCATTTCCCCCATTCCCTTCTCCT
CTTTTTCCCCGTCCGCTTTCTCCCCCTATTCCTCTTTTTTTTTCCCCTCT
CTTCCTTGTCCCTTCCCGCCCCTTTTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_k19.b1 MSMg01no342_k19.b1 CHROMAT_FILE:
MSMg01no342_k19.b1 PHD_FILE: MSMg01no342_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:15 2005
         (245 letters)



>mm_chr8_84520519_84521163
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacaatcaggttttcttttggggtatgtttgggattacttgagagatgcagtaggtagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacaatcaggttttcttttggggtatgtttgggattacttgagagatgcagtaggtagt 260

                                                                       
Query: 61  tgttgaaatgattatccccagtgaaatatatctgcgaagactgtggagctcaaagagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgaaatgattatccccagtgaaatatatctgcgaagactgtggagctcaaagagagt 320

                                                                       
Query: 121 aggctgaggagacagatggtgtttatagtacatttaaaacctcagcatttactttaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctgaggagacagatggtgtttatagtacatttaaaacctcagcatttactttaaaac 380

                                                                       
Query: 181 tggaggactcctatctttggcagcatcccaaagccaaactatttcccattgattggtatg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaggactcctatctttggcagcatcccaaagccaaactatttcccattgattggtatg 440

                
Query: 241 aatca 245
           |||||
Sbjct: 441 aatca 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)