BAC Information

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BAC

Clone NameMSMg01-342M20
Chromosome8 (Build37)
Map Location 119,860,667 - 119,861,131
singlet/doubletsinglet
Overlap gene4933407C03Rik
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
Downstream genePlcg2, 4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342M20.T7 (MSMg01no342_m20.b1)MSMg01-342M20.TJ (MSMg01no342_m20.g1)
ACCAG456266AG456267
length725737
length of high quality
(start - end)		184 (114 - 297)465 (62 - 526)
definitionCHROMAT_FILE: MSMg01no342_m20.b1 PHD_FILE: MSMg01no342_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:25 2005CHROMAT_FILE: MSMg01no342_m20.g1 PHD_FILE: MSMg01no342_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCAATACGACTCACTATTCGGTGACGTCCGCGGAATTCACTATTTACGG
TAGCTGGGCTCTACCTCACAGAGATCTGCCAGCCTTTGCCTCCCAAGCTC
TGGGCTTAAAGGAGCATGCCACTCTACCTGGCTCAAGATTCTCTTCAATC
CATAATCCTCTAATCCTGCCTCAACCTCCAGAGGCTGGGATTACTGGTTT
GAGTTACCACACCCGGCTTTGCAGGGTCTCTTTGAACCATAAACTGTGTG
TTAAGTCGATCTTGTTTCAATAAAAACATGACTTACTTTTTAAGAATATT
TTTTTACCCACTGCTGCAGTTCCTGACAAATGGCAGGGAACAGCACACGT
CCCACTCCGGGTTAAACTGCCACGGTGCAGCCAGGCCCGTGAAAGCAAGA
GGCAGATCAATGTGTGCTGATAAGGAACCAGCCCCAGGTGAAAAGAAATC
AAGGAGTACAGCTTATATGTATTATTTATTACACTCCTGTCACATGAATG
TTGACTATTACCATATTACTAAACCACTAATGATTTGGACACTCTTACCT
TCAGTTGTAATGACTTTCCCTCCCACATCCCCCTGCCGATTGTTTATTGC
TCTATTATACCGTACTGGTCTCTTTTTTTCTTCTCCTCTTTCTTTTTGCC
TGCTTCATTCTATTCACTTTCTTCCAATCCACCCATTACATCACTTTATT
CCTCCTTATTCCTCCACTCTATTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCATATGAAACATGAAGGAATAGAGGGGTCAAGTCAC
TTGCCTGAGGTCACACAGCTAGATGGAGTGGCTCTCCCTGTTACCTGTTG
TGCCTCTCCCTGTTGGCTGTGTGTCCTGGCCAACCTAGCCAGTCCCTGGG
TTACTTCTTGGTGTTTCTTATTCCTTATGGAATGCTATTTCTATTTTAAA
AAGAAATACTTGGCTGGGCAGTGGTGGCGCATGCCTGTAATCCCAGCACT
TGGGAGGCAGAGGCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGT
TCCAGGATACAAGCACTGGGGTCTGAGAGTTGAATGTTCCTTTAGACTTT
ATGTTTATTGCTTTTATAAAATGGTGGTAAAAATACACATACTATAGAAT
TGATCGCTCTCTCAGTCTTTCTCTGAGACAGCTTCACTGTTCAGGCTGGC
CTTGAACTCATGATTCCCCTGCCTCAGTGCTGATATTATAGGTATGCCCC
ACCACCCCTGGCTAGGATTTCTTCCCTCAAGTCTCTCTAAGTGTGTATAA
GTTCAGTTGCCAATTCCTGTTATTGTCAACGTATTTTTTGTTCTTTGGAA
TTTTTTAGTTGTCATTATGGCCACCCAAAAAGTGTTTGTCCCCTTTTTTT
CCTATCTCCCGTCCTTTCTTTTCTTTCATCTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_m20.g1 MSMg01no342_m20.g1 CHROMAT_FILE:
MSMg01no342_m20.g1 PHD_FILE: MSMg01no342_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:25 2005
         (465 letters)



>mm_chr8_119860467_119861331
          Length = 865

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatatgaaacatgaaggaatagaggggtcaagtcacttgcctgaggtcacacagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatatgaaacatgaaggaatagaggggtcaagtcacttgcctgaggtcacacagcta 260

                                                                       
Query: 61  gatggagtggctctccctgttacctgttgtgcctctccctgttggctgtgtgtcctggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggagtggctctccctgttacctgttgtgcctctccctgttggctgtgtgtcctggcc 320

                                                                       
Query: 121 aacctagccagtccctgggttacttcttggtgtttcttattccttatggaatgctatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacctagccagtccctgggttacttcttggtgtttcttattccttatggaatgctatttc 380

                                                                       
Query: 181 tattttaaaaagaaatacttggctgggcagtggtggcgcatgcctgtaatcccagcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttaaaaagaaatacttggctgggcagtggtggcgcatgcctgtaatcccagcactt 440

                                                                       
Query: 241 gggaggcagaggctctgagtttgaggccagcctggtctacagagtgagttccaggataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaggcagaggctctgagtttgaggccagcctggtctacagagtgagttccaggataca 500

                                                                       
Query: 301 agcactggggtctgagagttgaatgttcctttagactttatgtttattgcttttataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcactggggtctgagagttgaatgttcctttagactttatgtttattgcttttataaaa 560

                                                                       
Query: 361 tggtggtaaaaatacacatactatagaattgatcgctctctcagtctttctctgagacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtggtaaaaatacacatactatagaattgatcgctctctcagtctttctctgagacag 620

                                                        
Query: 421 cttcactgttcaggctggccttgaactcatgattcccctgcctca 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcactgttcaggctggccttgaactcatgattcccctgcctca 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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