XXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCCATG
TATGCAACAGGTTGTTTGTTATTTCAACTCAACTGCATACTGATTTAACA
ATAACAACAAAAACTAACAAAAAACTTTCTTCCTGACTTTGTTAATTCAA
TATTCTAACCTGAAACAGAATCTCAAAGTGGAAACGAGCTAAGCCGCATG
TCACAGTGTAGAATCCTGAACGCATATGCAGAAGGAGCCCATGTGAGCAG
GTGGCCTACTTTTCCGACCCAGCGAAATAAAGTATTTAAACCACAGTCAA
AGAAACTATAGGCATGAGAAAAATGATCCCAGAAACAACGATTCCATTTG
TGGTGAAACATTGGATATACTGAAAGGTAGACAGAAAATATAAACAGCAA
ACCTGAGCAAGCAGAAAGTTCGTGTGTCATCATTCTTAAAAAGAAAACAA
ACAAACATGCATACAAATGAAAAATATTTTAGAAATAGTTTAGTGTCTAT
GATCTTGGATCAGAGCAGTAAGTAGTCCTGTAGGAGGTAAGGTATAAATA
TAAACTGTGTTATGAGAGTCACTGGTGATTGGTTCTAAACACACCATGGT
TCATTGGCTGGCACAGTTTCTCTTAAACTTTGGGCATATGTGGGTACAGA
ATAGGTATTCTGGGCTCTGCTCGTTTGTTTCCTGATGGTTGCATCATTCA
TTGATTTATN

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAATAACTCACTTAAAGAGATACAGGAGAACACTGC
TAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGT
TACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACATGTAGAAGTT
CTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACGA
AACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAA
GTGAGGCAACGCTGGAGATAGAAATCCTAGGAAAGAAATCTGGAACCATA
GATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGG
TGCAGAAGATTCCATAGAGAACATGGGCACAACAATCAAAGAAAATGGAA
AATGCAAAAAGATCCTAACTAAAAACATCCAGGAAATCCAGGACACAATG
AGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCA
ACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCC
CAAATCTAAAGAAAGGATGCCCATGAACTTATAAGAAGGCTACCGAACTC
CAATAGAATGGGACCAAAAAGAAATTCCTCCCAACCATAAAATCCGAACC
TCCAAGGCCCTAATAAAGAAAAG

Query= MSMg01no342_n16.b1 MSMg01no342_n16.b1 CHROMAT_FILE:
MSMg01no342_n16.b1 PHD_FILE: MSMg01no342_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:29 2005
         (583 letters)



>mm_chr8_39014042_39015024
          Length = 983

 Score = 1104 bits (571), Expect = 0.0
 Identities = 574/575 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattccatgtatgcaacaggttgtttgttatttcaactcaactgcatactgatttaaca 68
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattccatgtatggaacaggttgtttgttatttcaactcaactgcatactgatttaaca 724

                                                                       
Query: 69  ataacaacaaaaactaacaaaaaactttcttcctgactttgttaattcaatattctaacc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ataacaacaaaaactaacaaaaaactttcttcctgactttgttaattcaatattctaacc 664

                                                                       
Query: 129 tgaaacagaatctcaaagtggaaacgagctaagccgcatgtcacagtgtagaatcctgaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgaaacagaatctcaaagtggaaacgagctaagccgcatgtcacagtgtagaatcctgaa 604

                                                                       
Query: 189 cgcatatgcagaaggagcccatgtgagcaggtggcctacttttccgacccagcgaaataa 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cgcatatgcagaaggagcccatgtgagcaggtggcctacttttccgacccagcgaaataa 544

                                                                       
Query: 249 agtatttaaaccacagtcaaagaaactataggcatgagaaaaatgatcccagaaacaacg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agtatttaaaccacagtcaaagaaactataggcatgagaaaaatgatcccagaaacaacg 484

                                                                       
Query: 309 attccatttgtggtgaaacattggatatactgaaaggtagacagaaaatataaacagcaa 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attccatttgtggtgaaacattggatatactgaaaggtagacagaaaatataaacagcaa 424

                                                                       
Query: 369 acctgagcaagcagaaagttcgtgtgtcatcattcttaaaaagaaaacaaacaaacatgc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acctgagcaagcagaaagttcgtgtgtcatcattcttaaaaagaaaacaaacaaacatgc 364

                                                                       
Query: 429 atacaaatgaaaaatattttagaaatagtttagtgtctatgatcttggatcagagcagta 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atacaaatgaaaaatattttagaaatagtttagtgtctatgatcttggatcagagcagta 304

                                                                       
Query: 489 agtagtcctgtaggaggtaaggtataaatataaactgtgttatgagagtcactggtgatt 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agtagtcctgtaggaggtaaggtataaatataaactgtgttatgagagtcactggtgatt 244

                                              
Query: 549 ggttctaaacacaccatggttcattggctggcaca 583
           |||||||||||||||||||||||||||||||||||
Sbjct: 243 ggttctaaacacaccatggttcattggctggcaca 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)