BAC Information

Click to search

BAC

Clone NameMSMg01-343F16
Chromosome8 (Build37)
Map Location 115,826,958 - 115,827,447
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F16.T7 (MSMg01no343_f16.b1)MSMg01-343F16.TJ (MSMg01no343_f16.g1)
ACCAG456685AG456686
length772796
length of high quality
(start - end)		494 (33 - 526)324 (64 - 387)
definitionCHROMAT_FILE: MSMg01no343_f16.b1 PHD_FILE: MSMg01no343_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:09 2005CHROMAT_FILE: MSMg01no343_f16.g1 PHD_FILE: MSMg01no343_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGAAAT
CTTTAAATTTATTTCCGGATCAGAGAACTATTGTTTTTGAATATTGCCGA
TCATGCTATCTCTTTCTGTTCTTCCTAAAATGGACAGCTTGATGTTTTAT
GGGAAATTAAAAGTCACATTGTATCTGGAAATAAAAGGCTGTATTTTATT
AACTGAAATAGAATTACAAGAGCCACGAACCATTTCTAAACTCTGAATAA
AATTAGGTTGGGAAAGCACAAAATGCATTAATTACCAGTGTTACAGGCTC
TGGTGGCCTTCAAGTAGAACATTTTTGCTTGTTTTCTATTTACTTCAAAT
CCAGGGTCTTACACATACTGGATAAGCATCCTGCTACTGAGTTGTACCCA
GCTCTTTAAGGTGCTCCTTAAATACTGTCATTTCTACATCTATCTAGATA
TAGGTTAGAAGAACTAATATCACAGCAATGTCCGTGTTATTGCACACAGT
GTACAGATTCAATGCCAACTCTATCAGTGGCATTTTCTACAAGGGTAGGG
AAAAATAATCCTGCTTTTGGATGAAACCACAAAGGCTCCCTGATATGGCC
CGAGAAATCTGAGGACTAACAAAGGCCAGGGTATCATAACTCCCCTCACC
TATATGAAGCCTTGGTTAACATATGCCATAAAAAAAATTCGATTCCTATT
CATACAATAAAAACGCCTATTCCCTACCCCCCACATTCTCTTCCCGCTCT
CTTTATTTTTCTCAGAAATTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCACGAATGGGTGTTG
GATCTTGTCAAATGCTTTTTCTGCATCTAACAAGATGATCATGTGGTTTT
TGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATA
TTAAACCATCCCTGCATCCCTGAAATAAAACCTACTTGGTCAGGATGGAT
GATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGA
TTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTT
GTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATATTGGCTTCATATAA
TGAGTTGCCCAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCT
GAACTGGGATTATATCTTCTTTGAATGTTTGATAAAACTCTGCACTAAAC
CCCTTTTGAGCCTGGTGTTTTTTTTTGTCGCCCACCTTTAATACACTGGC
TTCTTTTTTTTTCCCCCTTAATTTCTATTTCTTCTTATCTCACTTTTCTC
TTCTTTCTTCTTCTCTTTTTTTTTCTTTTATTTTTCCCCCCTCTCTTTTT
CTTTTCTTCTCTCCCTCTCCTTTCTACTCCCTATTTTGTCTTTTTTTCCA
TCTTCTTCTTTTTCTTCTCCTCTTCCCTATCTTTCATTACACTACCTCTT
TAGATTATATTTTTACCCTTCCCCCACCTTTCTTTTAACTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f16.b1 MSMg01no343_f16.b1 CHROMAT_FILE:
MSMg01no343_f16.b1 PHD_FILE: MSMg01no343_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:09 2005
         (494 letters)



>mm_chr8_115826831_115827724
          Length = 894

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgaaatctttaaatttatttccggatcagagaactattgtttttgaatattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattctttgaaatctttaaatttatttccggatcagagaactattgtttttgaatattg 558

                                                                       
Query: 65  ccgatcatgctatctctttctgttcttcctaaaatggacagcttgatgttttatgggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccgatcatgctatctctttctgttcttcctaaaatggacagcttgatgttttatgggaaa 498

                                                                       
Query: 125 ttaaaagtcacattgtatctggaaataaaaggctgtattttattaactgaaatagaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttaaaagtcacattgtatctggaaataaaaggctgtattttattaactgaaatagaatta 438

                                                                       
Query: 185 caagagccacgaaccatttctaaactctgaataaaattaggttgggaaagcacaaaatgc 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caagagccacgagccatttctaaactctgaataaaattaggttgggaaagcacaaaatgc 378

                                                                       
Query: 245 attaattaccagtgttacaggctctggtggccttcaagtagaacatttttgcttgttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attaattaccagtgttacaggctctggtggccttcaagtagaacatttttgcttgttttc 318

                                                                       
Query: 305 tatttacttcaaatccagggtcttacacatactggataagcatcctgctactgagttgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatttacttcaaatccagggtcttacacatactggataagcatcctgctactgagttgta 258

                                                                       
Query: 365 cccagctctttaaggtgctccttaaatactgtcatttctacatctatctagatataggtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cccagctctttaaggtgctccttaaatactgtcatttctacatctatctagatataggtt 198

                                                                       
Query: 425 agaagaactaatatcacagcaatgtccgtgttattgcacacagtgtacagattcaatgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agaagaactaatatcacagcaatgtccgtgttattgcacacagtgtacagattcaatgcc 138

                     
Query: 485 aactctatca 494
           ||||||||||
Sbjct: 137 aactctatca 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |