Query= MSMg01no343_f17.b1 MSMg01no343_f17.b1 CHROMAT_FILE:
MSMg01no343_f17.b1 PHD_FILE: MSMg01no343_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:09 2005
(496 letters)
>mm_chr8_105521279_105522174
Length = 896
Score = 905 bits (468), Expect = 0.0
Identities = 486/492 (98%)
Strand = Plus / Plus
Query: 5 gaattctcaccttactacactttttcatcaattgtcaaaaccagtttacactgctatatc 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattctcaccttactaaactttttcatcaattgtcaaaaccagtttacactgctacatc 264
Query: 65 ccatgggcagtctgtaatttcctgaaattacaaggaaaataatatcgagggagcctttgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgggcagtctgtaatttcctgaaattacaaggaaaataatatcgagggagcctttgc 324
Query: 125 caatgccttaagagaaaccgtatcaagaggcagcactcagctaccttcctttgtcctgca 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatgccttaagagaaaccatatcaagaggcagcactcagctaccttcctttgtcctgca 384
Query: 185 tgtgagttaaatcactccccacagaaatataatagtccatgaaaatatgtgtgtcttggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgagttaaatcactccccacagaaatataatagtccatgaaaatatgtgtgtcttggc 444
Query: 245 ctgtaaaaagctaacatggagcagagtgggaaggatgcattcaacagctgtgaactgatt 304
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ctgtaaaaagctaacatggagcagagtgggaaggatgcactcaacagctgtgaactgatt 504
Query: 305 gagtcagagcatctgataaaaggtaattttaatattctatctcactcacacctctacttc 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagtcaaagcatctgataaaaggtaattttaatattctatctcactcacacctctacttc 564
Query: 365 tcaaaggaaaagttatcacatcaatttcatagatgagaaaaacgaccccagggattgggt 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 tcaaaggaaaagttatcacatcaatttcatagatgagaaaaatgaccccagggattgggt 624
Query: 425 tgacatccaggcagttggtgatgagaggtagaataagatttccagtcaatgctttctgga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgacatccaggcagttggtgatgagaggtagaataagatttccagtcaatgctttctgga 684
Query: 485 tctggagctggt 496
||||||||||||
Sbjct: 685 tctggagctggt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_f17.g1 MSMg01no343_f17.g1 CHROMAT_FILE:
MSMg01no343_f17.g1 PHD_FILE: MSMg01no343_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:10 2005
(444 letters)
>mm_chr8_105681555_105682398
Length = 844
Score = 717 bits (371), Expect = 0.0
Identities = 409/435 (94%), Gaps = 23/435 (5%)
Strand = Plus / Minus
Query: 1 acctgatccattccattgttaagaattcattcttgcctggagtggtggcacacatcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 acctgatccattccattgttaagaattcattcttgcctggagtggtggcacacatcttta 769
Query: 61 atcccagcacatgggaggaagaagcaggcagatttctgagttggcgaatcgtgatctaca 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 768 atcccagcacttgggaggaagaagcaggcagatttctgagttggcgaatcgtggtctaca 709
Query: 121 gagtgaattccacaacagccagggctatacagagaaaccctgtctcgaaacaaacaaaca 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gagtgaattccagaacagccagggctatacagagaaaccctgtctcgaaacaaacaaaca 649
Query: 181 aacaaaaaacccataaagc-------aaaaaaaca----aaaacaaaac----------- 218
||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 648 aacaaaaaacccataaagcaaaaaaaaaaaaaacaaaacaaaacaaaacaaaaaaaaaaa 589
Query: 219 -aaaacaacaaaaaacaattcattcttgaagatgatctgtggccaccaccacaatcatta 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaaaacaacaaaaaacaattcattcttgaagatgatctgtggccaccaccacaatcatta 529
Query: 278 tgtaagcacaaagtttcaactaattaaaataacccctataccaaaacaaacagacagata 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgtaagcacaaagtttcaactaattaaaataacccctataccaaaacaaacagacagata 469
Query: 338 aaaaatcaaaaacaaaacaacaacactccctggcacacacacacacacacacacacacac 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaaaatcaaaaacaaaacaacaacactccctggcacacacacacacacacacacacacac 409
Query: 398 acacacacacacaca 412
|||||||||||||||
Sbjct: 408 acacacacacacaca 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
