BAC Information

Click to search

BAC

Clone NameMSMg01-343H06
Chromosome8 (Build37)
Map Location 79,365,667 - 79,365,923
singlet/doubletsinglet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226
Downstream geneLOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343H06.T7 (MSMg01no343_h06.b1)MSMg01-343H06.TJ (MSMg01no343_h06.g1)
ACCAG456759AG456760
length770802
length of high quality
(start - end)
407 (39 - 445)262 (70 - 331)
definitionCHROMAT_FILE: MSMg01no343_h06.b1 PHD_FILE: MSMg01no343_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:17 2005CHROMAT_FILE: MSMg01no343_h06.g1 PHD_FILE: MSMg01no343_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TACATGCATAGAATATATTTTGATCATATTCAGCCCCTATTGTCCCACAT
ACAACTCCTCCCAAATCTACCTCCCAACCCTACCCCTGAACATGGATTAA
AAAAAAAACCCAACCCAAACCAGTTTATGTTGTTTATATACTCAGAGGTG
TGGGCCCATCTATTGGAGCATTTTCTACTCACCAAGACTTATACCACTGA
CAAAAATTGGCTCTCCCTCTGCCAGAACTCATCAGCTATCAATATCCCCT
CAGCTAGGGATGGGGAGCTCATGGACCATTATTCCTCCAGGCTGGAGTAT
TACTGTATGTGCAGCTTATTTATGTGGATTCCAGAATAAAATTCAGGTTC
TCGTGCTTACAAGGAAAGTACTTTAATGAATGATCTATATCTCCAGCTCT
CACCTGGTATCCTTCCTGCAGCCCCATTGGTTACTATCCATCCATTAGTG
AGGAAATGTATTATGCTTTAATATATTGATTTTAACCTTTCTCTATTCTT
CTCTCTACTTCCTATATAATTACTCCTATTTTTTTTTCTTATTCCTCTTT
TATATCTCTTTTATTATTTTATCGTATATCACTCATTGCTTCTCTATTCT
TTATTTTCTTTCTTATATCACCTCTTATTTTCTCCCTCTCCCTCCTCCCT
CTCTTTTTCTCTTTTTTTCCTTCCTACCTCCTTATTTCTCCTCCCACTTC
TTCTTTCCCCATTTCATCTN
TCGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATCTTTTATTTGACTGGAGGGGGGGGTGAC
ATAGTGAACTAAAATGGCAGAGTTCCTGAGCTTGATGACTAAAGACTATG
TACACTAAGGACAATTTAAGACAGCTTCCTGGCTGAAATGATCATGTTAA
CTGAGGTAAAAGACATCATTCTAGACATGGTTTCACCATCCCATGGTCTA
CAGTTCTTGGCTCCCTGACTGCAGATGCAATGGAACCAGCTACTCCAGGC
TCCCATTGCTGTGTTGTCCCTGCCATGATATATTATAGCCTGGAGCTGTG
ATCCACGACAATCTTTCTTTCCATGACATACTTTTGTCTTGTTCTTCCTA
TTCTTTATTGACACAACTTTTCTATTACATATTACTAACTTTTACCACTT
ACATCTTACTCTCCATTTCTCACCATCAACACCCTTGCTTAGTCCTGTTT
TTTATTTTTTTTCTCCCCCTCCTCTTCCCATCTCTCTATTCTTTTTTTCC
TCACTTCATATTTTTTTCTCCTTCATACCTTTCTTTTCATTTTCCTACAT
CATTCCTTTCTTTTTCGTCCTACCTTCACCCGCTCTTTTTTCTTTTTATT
TATCCTCTACCTTCATCACCCTTATCTTACTTTCTCCCTTTATCCTATTC
TCTTCCTTTTTTCTCTTTCCCCTTTCCTTATATTCCACTATAACCCAAAC
TTTTTTCTTTTATCTATTATTTTTCTACACCCTTCTCTTCTAACTTTTTC
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_h06.g1 MSMg01no343_h06.g1 CHROMAT_FILE:
MSMg01no343_h06.g1 PHD_FILE: MSMg01no343_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:17 2005
         (262 letters)



>mm_chr8_79365463_79366123
          Length = 661

 Score =  460 bits (238), Expect = e-134
 Identities = 253/258 (98%), Gaps = 1/258 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttttatttgactggaggggggggtgacatagtgaactaaaatggcagagttcctgagctt 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttttatttgactggaggggggg-tgacatagtgaactaaaatggcagagttcctgagctt 263

                                                                       
Query: 65  gatgactaaagactatgtacactaaggacaatttaagacagcttcctggctgaaatgatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatgactaaagactatgtacactaaggacaatttaagacagcttcctggctgaaatgatc 323

                                                                       
Query: 125 atgttaactgaggtaaaagacatcattctagacatggtttcaccatcccatggtctacag 184
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct: 324 atgttaactgaggtaaaagacatcactctagacatgggttcaccatcccatgggctacag 383

                                                                       
Query: 185 ttcttggctccctgactgcagatgcaatggaaccagctactccaggctcccattgctgtg 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcttggctccctaactgcagatgcaatggaaccagctactccaggctcccattgctgtg 443

                             
Query: 245 ttgtccctgccatgatat 262
           ||||||||||||||||||
Sbjct: 444 ttgtccctgccatgatat 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 661
Length adjustment: 9
Effective length of query: 253
Effective length of database: 652
Effective search space:   164956
Effective search space used:   164956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)